Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121050g00002 ATGGAGAGCACCGACTCATCCACCGGTTCGCAACAACCGAACCTTCCACCAGGGTTTCGGTTCCACCCCACCGATGAGGAGCTCGTTGTTCACTACCTCAAGAAGAAAGCTGCATCGGCTCCTCTCCCAGTCGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCAGCTAAGGCGACGTTTGGCGAGCAAGAGTGGTATTTCTTTAGCCCAAGGGACAGGAAATATCCGAACGGGGCTCGGCCAAACAGGGCGGCAACTTCGGGGTACTGGAAGGCGACCGGGACTGATAAGCCGGTGTTGACCTCCGGTGGGACCCAGAAGGTTGGTGTGAAGAAGGCTTTGGTCTTCTATGGAGGAAAGCCACCCAGAGGGATCAAGACTAATTGGATCATGCATGAATATAGACTTGCTGACAACAAACCTAACAATAGGCCTCCTGGTTGTGACTTGGGTAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGTTGTGCCGAATCTACAAGAAGAACAACACACATAGGTCACCAATGGAACATGAAAGGGAAGATTCCATGGATGACATGATTGGAGGGATCCCTCCTTCCATCAACGTGGGACAAATGAATGCTAGATTTCATCTCTCAAAAATGTCAACAAGCTTTACCAACGCTTTGTTGGAAAGCGACCACCACCATCACCACCACCAGAATCTTCTGGAAGGGATGATGATAGGAGGAGGAAACAACAACAATAACAACAGCAATGGTAGTGTTGTTGTTCCTCCAAGCATGTTGGGATCAGCCTCAAACACCATTAATAATAATAGTAAGGCAGAGCTTTCATTTGTACCAACCTTGACTACATCTTCAAACAACAATTCAGGTGGTTCCAAGAGGACACTATCATCACTCTATTGGAGTGAAGATGACGTGGCTGGTTCCAACAAAAGGTTCAATTTGGAGAGTGGAGATAACAATCATCATGGAGGAAGTGTGGTAAGAACTGAAGAGAATAATAATGGTACTACCTCAAGTTCTATTGCTACTCTGCTTAACCAACTCCCCCAAACCCCTTCATTGCACCAACAAACCATGATGGGAGCAATACCTTATCAAATTCAAGGGATGAATTGGTATGCTTAA 1143 0.4672 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKNNTHRSPMEHEREDSMDDMIGGIPPSINVGQMNARFHLSKMSTSFTNALLESDHHHHHHQNLLEGMMIGGGNNNNNNSNGSVVVPPSMLGSASNTINNNSKAELSFVPTLTTSSNNNSGGSKRTLSSLYWSEDDVAGSNKRFNLESGDNNHHGGSVVRTEENNNGTTSSSIATLLNQLPQTPSLHQQTMMGAIPYQIQGMNWYA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121050g00002 380 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121050g00002 380 MobiDBLite consensus disorder prediction 1 17 - -
Stsc121050g00002 380 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Stsc121050g00002 380 FunFam NAC transcription factor 56 24 181 - -
Stsc121050g00002 380 PANTHER NAC TRANSCRIPTION FACTOR 56 15 227 - -
Stsc121050g00002 380 MobiDBLite consensus disorder prediction 318 343 - -
Stsc121050g00002 380 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Stsc121050g00002 380 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Stsc121050g00002 380 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121050g00002 Stsc-Chr121050 16070 17701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121050g00002 1 380 NAC Transcription Factor Family AT3G15510 51.768 1.25e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121050g00002 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121050g00002 - - vra:106763825 575.859