Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121047g00012 ATGTCCTCCAATTCAATTTTCCTCCTAAAACCTTCATTCCAATTCTCAACCCAACACCATCACCACCACCACCAATACCACCTTCTAAAACCCAAAACACCATTTTCAAAAACCATATTTTCTCCATATTACCCAAAATACCCTCCACCACCATTTTCCTTTGCTCTTAGAATCCACAGCTCCACCACCACCACCCCCATAACCAAAACCTCTTCAAACACCAAAAAGAACGAAACTTTACAATTCCTGACACCTTTTCTCATCTCAAACCACAAACCCATCATCTTGGGTTGGCTCTGCAGCGTCGTCTCAGTCTTCTCTCTCTCCCAGCTCGTCTCTAGACTCGGAAAATTCTCCAACGCCGCCATTGATGGACCTCAATTGAGGAGCCAAGGTCTCATCTTGCTGTGTCTTGTGGCTGCCCGTTTGGTCTCCGGGTATGGGCAGCATGCCCTTCTTTGGGACGCTGCCCTTAAGACAGTGTACGAGGTTCGTGTCCATGTCTTTGACCGTGTCCTTGAGAGGGAGCTTGACGTGCAAGAAGCATTGTTCTATCATGCAGTATTCTCATTTACATGCTATTTGTGTGTGCAAACCATAGTACCTAGCACTCTCCAACTATCGGCGATGATGGCTCAGATGATAGTTATAAGTCCAGTCCTTTCTTTGATTTCATTCACGGTCATTCCTTGCATGTCACTTTTTGTTGCTTATCTTGGTCAAGAACTTCGAAAGATATCTAGAGAGGCACATCTTAGCATTGCTGCTCTCTCAGCGTATCTAAATGAGATGATTCCTGCGATTTTCTTTGTGAAAGCAAACAACGCGGAGTTGTGTGAGAGTGCAAGGTTTAAGCGGCTGGCTCAGATTGACTATTATGCAAAATTGAACAAGAGGAGGATGAAAGCGGCTATTCCTCAGGTCATACAAGCTATTTACTATGGAACTCTCTCCATACTATGCGCTGGTTCGCTGTTGATTTCGAGAGGATCATTTGATGGCCACAGCTTCATTGCCTTTGTGACATCATTGCTTTTCTCTATTGAACCAATCCAGGATGTGGGAAAAGCTTACAACGAATGGAGGCAGGGAGAACCAGCTGTTGAACGCTTGCATGATATGACCAAGTTCAAAGATAAGGTGGTTGAGAAACCAGATGCTGTTGACTTAGACCATATTATGGGAGAGCTGACATTTCGTGACGTCTCCTTTAGATATAATGATGACACGCCTCATATTTTGAATGGGTTGAATCTTAACATTAGAGCCGGGGAGATAGTCGCTCTTGTTGGTCCTTCTGGTGGCGGGAAAACAACGCTTGTAAAACTATTGCTTCGGCTTTACGACCCTGTGTCTGGTTCTATTCTAATTGATAACCATAACATTGAAAACATTCGGTTGCGAAGTTTGAGAAAACATGTTGGTCTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAATTGCTGAAAACATCGGTTATAGGGATCTAACAACAAAAATTGACATGGAGAGGGTAAAGCATGTAGCACAAACTGCTCATGCGGACGAGTTTATAAGAAAACTTCCTGAAGGATACGAAACCAATATCGGACCGAGGGGCTCTACCTTAAGCGGAGGCCAGAGGCAAAGGCTGGCAATTGCAAGGGCCCTCTATCAGAATCCCTCTATCTTAATTCTGGATGAAGCAACTTCGGCTTTAGATAGTAAATCCGAGTTATTGGTTAGAAAAGCTGTCGAGCACTTGATGGAAAATCGCACGGTTCTTGTGATAGCTCATCGCTTAGAAACAGTTATGATGGCTAAAAGAGTATTCCTTATGGATAATGGGAAGCTACAAGAAGTTCCAAGATCAACCATGTTTAATGGTCACAAGGATTCATTGTTATCATCTGGCCTTGTTATTTGA 1908 0.4334 MSSNSIFLLKPSFQFSTQHHHHHHQYHLLKPKTPFSKTIFSPYYPKYPPPPFSFALRIHSSTTTTPITKTSSNTKKNETLQFLTPFLISNHKPIILGWLCSVVSVFSLSQLVSRLGKFSNAAIDGPQLRSQGLILLCLVAARLVSGYGQHALLWDAALKTVYEVRVHVFDRVLERELDVQEALFYHAVFSFTCYLCVQTIVPSTLQLSAMMAQMIVISPVLSLISFTVIPCMSLFVAYLGQELRKISREAHLSIAALSAYLNEMIPAIFFVKANNAELCESARFKRLAQIDYYAKLNKRRMKAAIPQVIQAIYYGTLSILCAGSLLISRGSFDGHSFIAFVTSLLFSIEPIQDVGKAYNEWRQGEPAVERLHDMTKFKDKVVEKPDAVDLDHIMGELTFRDVSFRYNDDTPHILNGLNLNIRAGEIVALVGPSGGGKTTLVKLLLRLYDPVSGSILIDNHNIENIRLRSLRKHVGLVSQDITLFSGTIAENIGYRDLTTKIDMERVKHVAQTAHADEFIRKLPEGYETNIGPRGSTLSGGQRQRLAIARALYQNPSILILDEATSALDSKSELLVRKAVEHLMENRTVLVIAHRLETVMMAKRVFLMDNGKLQEVPRSTMFNGHKDSLLSSGLVI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121047g00012 635 Gene3D ABC transporter type 1, transmembrane domain 187 376 IPR036640 GO:0005524|GO:0016020
Stsc121047g00012 635 Gene3D ABC transporter type 1, transmembrane domain 71 181 IPR036640 GO:0005524|GO:0016020
Stsc121047g00012 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 615 IPR027417 -
Stsc121047g00012 635 Gene3D - 387 631 IPR027417 -
Stsc121047g00012 635 ProSitePatterns ABC transporters family signature. 537 551 IPR017871 GO:0005524|GO:0016887
Stsc121047g00012 635 FunFam ABC transporter ATP-binding protein 390 631 - -
Stsc121047g00012 635 SUPERFAMILY ABC transporter transmembrane region 83 376 IPR036640 GO:0005524|GO:0016020
Stsc121047g00012 635 Pfam ABC transporter 414 565 IPR003439 GO:0005524
Stsc121047g00012 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 634 IPR003439 GO:0005524
Stsc121047g00012 635 CDD ABC_6TM_exporters 94 371 - -
Stsc121047g00012 635 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121047g00012 635 Pfam ABC transporter transmembrane region 199 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121047g00012 635 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 96 614 IPR039421 -
Stsc121047g00012 635 SMART AAA_5 423 611 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121047g00012 Stsc-Chr121047 57048 61866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121047g00012 387 632 Calmodulin-binding Proteins AT2G36910 45.382 1.09e-58 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121047g00012 K02021 - gmx:100788075 785.023