Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121047g00003 ATGGCTGCAAAATTTGATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTGTTTTAGACAACCTGTCTAAGATACTTGAAGATGAATCTGTCCTGTATGGAAACCACTCTGCCATGGAGTTCCTTCAAAGGTTGGAGGAATGTCTGCTTGATGTTGGTCCTGTGCTTGATGATGCTGAGCTGAAGCAGTTCACTGACAAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATTCTGCTGATGACTTCCTTGATGAACTCTCCACTAAAGCTGCCACTGCTACTCCAAGGGATCTAGGTATCTCTTCTTACTGTTCTTCTCTTGTTGATTCAATCTTGGAAGATACTCGCGACATCGAAAACATAGTTGGAAGACTAGAGTCTGCTGTAGCACGCAAAAATTCTCTTCGTCTGAAGGAGGGTGCCAAGGTGGACATGTCATCGAGAATTCCATCCACACATCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGACGAGGAGAAGGTAATCGAATTGTTGTTAGATGATACTTATCGTGCTGAATCAGCTGTTACTGTGATCCCGATTTGGGGTATGGGCGGAATAGGAAAAACTACTCTGGCTCAACTGGTCTACAGTAATGCTAAAGTGGTGGAAAAATTTACCACTAGAGCATGGGTGTGTGTTGCTGAAAGTTTTGATCCTGTTGGCCTTACAAGGACTATTCTACAGAAAATAAGTCCTAATTCTTCCTTTAACACCGACGATTTTGATTCACTTCAAACTCGTTTGAAAGAAGCGTTGACGGGAAAGACATTCTTAGTTGTTCTAGATGATGTCTGGCATGACCAGAAAGATAAATGGGAGCATCTTCTAAAACCTTTTCAGTACGGAAATCATGGAAGTAAAATTCTTCTAACAACCCGCAGTGAAAAGGTTGCTTCTGTGGTCGCAACTACTGAACTCCATTATCAGCTGAGTTTCTTGTCCGATGAAGATTGTTGGTCAGTGTTTTTGAAACAAGCACATCTTTCCACCGACTCTATCAATCCAACTCTGGAAAAAATCGGCAGAGATATTGTAAGGAAGTGTGATGGATTGCCCTTGGCAGCTCAAGGCCTCGGAGGCTTATTGCGTGGAAATTCTGATGTCAAGTCTTGGAATCTTATATTGAAGAGTGAAATCTGGGAATTTTCCGATGATACTATACAAATTGTTCCAGCTTTAAGAATCAGTTATTATTATCTACCTTCATGTCTGAAAAGGTGCTTTGTTTATTGTTCCCTATTTCCCAAAGATTATGAATTTGATAAAGGGGAATTGATCTTGTTATGGATGGCTGAGAATCTTTTGCAACCAGTAGAAAAAAGGACTCCAGAAGAAGTTGGTGATAAATATTTTGATGAATTAGTTTCGAGATCATTTATGCAACCTCATACTACCTATTTTGGTGAAAAGAGATTTGTGATGCATGATCTGGTGCATGATTTGGCAATGATGTTTGCTGGAGAATTCTGTTCCAGGGCCGAAGATCATGAGAAAGCTGTTCAGATAAGTATCAAAACTCGTCATTTGTCGCATATCGCACAAGAAGATTATCCAATCTCAAAGCTTTTGGAAGTTCGTGACAGAGTAAAAAATACCAGGGCATTTCTTAAAATCAACTCAAACCCATGGATGTCATTTAACATGGATGATGCAGCCTGTTTTTTGTCAGAATTGAAGTACCTCAGAGCTTTATCGTTCCGATCCATTGGTCTTGAGTTACTGCCTGATTCAATTGGGGAGCTGATTCATCTGCGATATTTGAATCTGTCTTTTAGCGACATTGTATCATTGCCTGAGTCATTGGGTAGGCTATACAATTTGCAGACCTTGAAGCTATATCAATGTTACATGTTGAAATTGCTTCCTGATAGCATGCAGGATCTTGTAAATTTACGTCATCTTGATATTAGAGGGACTCCCTTGAATGAGATGCCGAGAGGCATGAGCAAGTTGAAAAGTTTGCAGTTTTTAAGCGACTTTGCTGTTGGGAAGCATGAAGGGAACAAAATCAAAGAATTGGGAACACTTGCAAATCTACAGCATTCAATTTGCATTTACCATTTGGAGAATGTGGTCAACAGTAATGAAGCTTCGGAGGCAAAAATGTCAGATAAAGATGGCCTTGACCATTTGACCTTGTATTGGTCTTGGCGTTGGGATAGGGATGAGAATATAGTTGATTTCCAAAATGAAGAAGATGTACTGGACAAGCTACGACCTCACAGTAATTTGAAACACCTGCTAATCCAGGGTTACATGGGTACAGCATTTCCAGATTGGTTGGGTCGCTTTTCATACGACAACATCACTCACATAACACTGAGTCATTGCAGGAATTGTGGTGTTCTTCCTTCACTTGGACAGTTGCCCTTTCTGAAGCACCTATCAATTTCAAATTTTTCAAGATTGGGGATTGTGGGTGTTGAGTTCTACCGAGATGATGAATCTTGTTTGGAGACTCCATTTCCAATGCTAGAGACTCTTTGCTTTGACTCATTGAGTTGCTGGAAAGAGTGGCATTCAATGGAGTTGAATGCATTTCCTCAACTTAGGGAGCTTACCATAAGGTATTGTCGGATGTTGAGAGGAGATTTGCCAAATTATCTACCATCTTTGCAATCACTTGAGATTGGGAATTGCAAGGAGCTCAGTTGTAGTCTTCCAAGAGCTCCTGCGCTTACCAAATTAAATATGACTGATTTGTATAAAAAAGCTGGTGAAGGGAATCTTTTAGCAGAGTTGGCAATGGAGGCTATTAAGCAGAGGCAACTGATTTACCTCACTTTTTTATCAATCTCAGATTGTTCCTCCCACATATTGTTTCCAGTGAGTGCTATTCCCCCATCACTACACAAGTTCAAGATCCAGAGATGCAGAAGATTAGAATTCCAAATGGATGGCCAACATCACTCGCTGCAGGAATTAGAAATAATCAACAGCTGTGATTCAGTTACATCCTTCTCCTTGTTGGATGCCTTTCCAAATCTCAAGGATGTTGAAATCAGGAACTGTGAAAAGATGGAGTGTATTGTGGTGTCAGGCTCCCTTTCATGTCTCCGTTCTTTCACAATCAGGGATTGTGGGAGTTTGAAATCCGTGTGGAGCATATGGATGGCAGCACCTCAGCTAGAGAATCTCTCATTATTGGGTTGCCCAGAGATTGAGTTCTCTGCTGCTGCTGCAGGGGATCCTCATCGTTGCCTGAGATCTCTTAAAATCAGTTACTCGGACAAACTAGTGAGCTGTGCAACATTCATGAATTCCCAATTTCACGGGCTTACTCATCTTGAAATTTATGGTGAATGTGAGAGTGTGAAGTGCCTCCCAAAGGAAGGTTGGTTGCCTGCCTCCCTTGAGCATCTGGAACTGAATTACATTGAAAGTGTGGAGACATTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTCAAACAATTAACTATTGGGAGTTGTCCAGAGTTGGAGAATATCGAGGGAGAAAAGCTGCCTGCCTCTCTATTACGACTCAATATCAATGAAACCCCTTTGTTGGGTAAACAGTGCGAGATGAAGGACCCGCAAGTTTGGCCCAAAATTTCCCACATCCAAGAAATTCGAGTTGATTTCCAATTGATTTCATAA 3663 0.4139 MAAKFDGGAYLSSFVDAVLDNLSKILEDESVLYGNHSAMEFLQRLEECLLDVGPVLDDAELKQFTDKRVKKWLVDLQDALYSADDFLDELSTKAATATPRDLGISSYCSSLVDSILEDTRDIENIVGRLESAVARKNSLRLKEGAKVDMSSRIPSTHLVVSSDIFGRDKDEEKVIELLLDDTYRAESAVTVIPIWGMGGIGKTTLAQLVYSNAKVVEKFTTRAWVCVAESFDPVGLTRTILQKISPNSSFNTDDFDSLQTRLKEALTGKTFLVVLDDVWHDQKDKWEHLLKPFQYGNHGSKILLTTRSEKVASVVATTELHYQLSFLSDEDCWSVFLKQAHLSTDSINPTLEKIGRDIVRKCDGLPLAAQGLGGLLRGNSDVKSWNLILKSEIWEFSDDTIQIVPALRISYYYLPSCLKRCFVYCSLFPKDYEFDKGELILLWMAENLLQPVEKRTPEEVGDKYFDELVSRSFMQPHTTYFGEKRFVMHDLVHDLAMMFAGEFCSRAEDHEKAVQISIKTRHLSHIAQEDYPISKLLEVRDRVKNTRAFLKINSNPWMSFNMDDAACFLSELKYLRALSFRSIGLELLPDSIGELIHLRYLNLSFSDIVSLPESLGRLYNLQTLKLYQCYMLKLLPDSMQDLVNLRHLDIRGTPLNEMPRGMSKLKSLQFLSDFAVGKHEGNKIKELGTLANLQHSICIYHLENVVNSNEASEAKMSDKDGLDHLTLYWSWRWDRDENIVDFQNEEDVLDKLRPHSNLKHLLIQGYMGTAFPDWLGRFSYDNITHITLSHCRNCGVLPSLGQLPFLKHLSISNFSRLGIVGVEFYRDDESCLETPFPMLETLCFDSLSCWKEWHSMELNAFPQLRELTIRYCRMLRGDLPNYLPSLQSLEIGNCKELSCSLPRAPALTKLNMTDLYKKAGEGNLLAELAMEAIKQRQLIYLTFLSISDCSSHILFPVSAIPPSLHKFKIQRCRRLEFQMDGQHHSLQELEIINSCDSVTSFSLLDAFPNLKDVEIRNCEKMECIVVSGSLSCLRSFTIRDCGSLKSVWSIWMAAPQLENLSLLGCPEIEFSAAAAGDPHRCLRSLKISYSDKLVSCATFMNSQFHGLTHLEIYGECESVKCLPKEGWLPASLEHLELNYIESVETLECKGLAHLTSLKQLTIGSCPELENIEGEKLPASLLRLNINETPLLGKQCEMKDPQVWPKISHIQEIRVDFQLIS 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121047g00003 1220 Gene3D - 15 125 - -
Stsc121047g00003 1220 Pfam Leucine rich repeat 597 655 IPR001611 GO:0005515
Stsc121047g00003 1220 Pfam NB-ARC domain 169 390 IPR002182 GO:0043531
Stsc121047g00003 1220 FunFam Probable disease resistance protein At1g61300 148 319 - -
Stsc121047g00003 1220 PRINTS Disease resistance protein signature 191 206 - -
Stsc121047g00003 1220 PRINTS Disease resistance protein signature 881 897 - -
Stsc121047g00003 1220 PRINTS Disease resistance protein signature 265 279 - -
Stsc121047g00003 1220 PRINTS Disease resistance protein signature 362 376 - -
Stsc121047g00003 1220 SUPERFAMILY L domain-like 936 1206 - -
Stsc121047g00003 1220 Gene3D - 326 409 IPR042197 -
Stsc121047g00003 1220 Gene3D - 146 320 IPR027417 -
Stsc121047g00003 1220 Gene3D Ribonuclease Inhibitor 534 926 IPR032675 -
Stsc121047g00003 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 425 IPR027417 -
Stsc121047g00003 1220 SUPERFAMILY L domain-like 487 916 - -
Stsc121047g00003 1220 FunFam Probable disease resistance protein At1g63360 411 498 - -
Stsc121047g00003 1220 Gene3D Ribonuclease Inhibitor 937 1220 IPR032675 -
Stsc121047g00003 1220 PANTHER DISEASE RESISTANCE PROTEIN RP 70 943 IPR044974 GO:0006952
Stsc121047g00003 1220 SMART LRR_typ_2 595 618 IPR003591 -
Stsc121047g00003 1220 SMART LRR_typ_2 642 665 IPR003591 -
Stsc121047g00003 1220 Pfam Rx N-terminal domain 14 96 IPR041118 -
Stsc121047g00003 1220 Gene3D - 410 498 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121047g00003 Stsc-Chr121047 8186 12552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121047g00003 189 659 WRKY Transcription Factor Family AT5G45050 22.073 5.48e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121047g00003 - - aip:107626318 1483.77