Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121046g00006 ATGCGTCCGCCGTTGAAGAGAGTCGATTTCCGTCCAGGCGACAAGGTGGAGGTTTGCAGCAAAGAAGAAGGCTTCCTCGGCTCATACTACGAGGCAACCGTTCTTTCCCGCCTCGAAACCGGCCGTTACGTCGTCCGTTACAAGACACTCCTCCGTGACGACGCTGTTTCGGAGCCGTTAACCGAAACGCTTTTCCCGAGGGACATCCGCCCTTCCCCTCCGAAGGTATATACCCGCGGCGAATTCTCTCTCTACCAGGCAGTCGACGCCTTCGACAACGACGGTTGGTGGTCCGGCGAGATCACCGGCAGGCTTGGGCCCCACCATTACTATGTTTATTTCCGTACAACCAATGAAGAGATCGCTTATCCTTCCAGCAAGATTAGGGTTCATCATGAGTGGGTTAATGGCGATTGGATTCTCTCTCAAAGAGAAACGCCACAGCCACAGCCACAGCTACAGCAGCAGAATCAGGATCAGGAAGAACAGTTACCTCAACAATTCAATTGA 510 0.5333 MRPPLKRVDFRPGDKVEVCSKEEGFLGSYYEATVLSRLETGRYVVRYKTLLRDDAVSEPLTETLFPRDIRPSPPKVYTRGEFSLYQAVDAFDNDGWWSGEITGRLGPHHYYVYFRTTNEEIAYPSSKIRVHHEWVNGDWILSQRETPQPQPQLQQQNQDQEEQLPQQFN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121046g00006 169 Pfam Agenet domain 13 74 IPR008395 -
Stsc121046g00006 169 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 148 - -
Stsc121046g00006 169 CDD Tudor_Agenet_AtDUF_rpt1_3 10 74 - -
Stsc121046g00006 169 SMART agenet_At_2 80 136 IPR014002 -
Stsc121046g00006 169 SMART agenet_At_2 8 77 IPR014002 -
Stsc121046g00006 169 CDD Tudor_Agenet_AtDUF_rpt2_4 88 130 - -
Stsc121046g00006 169 Gene3D - 2 82 - -
Stsc121046g00006 169 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121046g00006 Stsc-Chr121046 60154 60663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121046g00006 20 134 PHD Transcription Factor Family AT5G58610 30.370 5.83e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121046g00006 - - adu:107478045 306.219