Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121042g00002 ATGGAGAGCAAAGAAGATGGTGTAAGCAATGGTGGTGGGGATATGCTGCATGATATTGAAAATGAAGGCATATTGTTGGATGGGAAGGACGGAATTCGGAGGAATTGGTCAGGGTTTTCGGAGAGGAACATGTCTTATGCAGAGCCACTGCTTGCAAAAAGGACTAACACCACCTCCCAGATTGCTATCATTGGTGCCAATCTCAGCCCTATTGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATTTTTAATCAGGACTGGAGGTCCCGGAAGAAGATTCAGATTATCCAATATGTGATACTTAAGTGGGGATTTGCTCTTATTATTGGATTAGGCACCGGACTAGTTGGCCTCTTCAATAATATTTCGGTCGAGAACATAGCAGGTTTCAAGTTGCTTCTGACAACCAATCTCATGTCTCAAAACAGATATCTTGAGGCTTTTGTAGCATATGCCGGTATCAGCGTCATTTTAGCAGCAGCTGCTGGTTCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCAGAGGTGAAAGCATATTTGAACGGCGTGGACGCGCATTCTATTCTAGCTCCGAGCACTCTTTTTGTAAAGATTTTTGGTTCAGTCCTTGGAGTTTCTGCTGGATTTGTGGTAGGAAAAGAAGGACCTATGAATGACCGAGACCGGCGAGACATGATCACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGCGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGAGGAGTGCTCTTTTGTGGAGGACATTTTTCACAACAGCAGTAGTTGCTATTGTTTTAAGAGCTGCAATTCAGTTTTGTGCCACGGGGAGATGCGGGTTATTCGGAGAAGGCGGTCTGATAATGTATGATGTTGGTTCTTCCAAGGTAACATACAGCACCGGCGACGTACTAGCAGCAATACTATTGGGAGTCATTGGAGGGGTTCTTGGAAGTGTATATAACTACCTTGTCGATAAGGTTGTTCGGACATATAGCATCATCAATGAAAAAGGTGCAATTTACAAAATCATACTTGTTGTTGCAATTGCTCTTTTGACATCATGTTGCTATTATTTCCTGCCATGGATTGCAACCTGCAAACCCTGCCCTACTAATACATCGGTGATCTGCCCCTCGGTCGATGAGTCCGGAGAATACAAAAGCTTTCAATGCAAACCAGGCTACTACAATGATCTTGCTTCTCTCTTCCTAAACACCAACGATGATGCTATTCGCAATCTATTCAGCTCTAGGATAACCAAGGAGTTTCATATTTCCAACTTGTTCATCTACTTTGGCACTATCTTCTTTCTTGGGATAGCAACTTATGGTATTGCTGTTCCATCAGGGCTCTTCATTCCTGTTATCCTTGCCGGGGCTGCCTACGGCCGGCTTGTTGGGAGACTATTCGAACCGATTGTTAAGCTTGACACAGGACTCTTTGCATTGCTTGGAGCTGCATCCTTTCTTGGTGGCACCATGAGAATGACAGTCTCCATTTGTGTGATATTACTTGAGCTCACAAATGACCTCTTGTTACTTCCACTTGTGATGCTGGTTTTATTGATTTCTAAATCTGTGGCTGATGGCTTCAACAAGGGTGTCTATGAACAAATTCTGAAGATCAAAGGACTCCCTTATATGGAGTCTCATGCAGAACCTTACATGAGGACTTTGGCTGCTCGAGATGTTGTCTCGGGTCCATTAGTAACCTTTTCCGGCATAGAAAAGGTTGGGAACATACTCCATGCTTTGGAAAGTACAGGACACAATGGTTTTCCTGTGATTGATGAACCACCTTTCTCAGATGCACCAGAGTTGTGTGGACTTGTTCTGAGGTCTCATTTGCTGGTGTTGCTTAAGGGGAAGAACTTCACAAAGGATAGGGTGTTCATGAGCCGTAGCATCTCGCAACGAATTTCAGCATTGGATTTCGCAAAGGCCGGATCAGGGAAAGGATTGAAACTAGAGGATCTTGACATCAATGAGGAAGAGAAGAGTATGTATGCTGATCTACATCCCATAAGCAATGCATCACCATACACAGTTATTGAGACAATGTCACTTGCCAAAGCTGCCATTCTCTTTCGCCAACTTGGACTCAGGCACATGTGTGTTGTCCCAAAGAGCCAAGGGAGACCACCAGTTGTTGGGATTCTAACTCGCCACGACTTTATGCCGGAACATATTTTGGGACTATACCCTGGAATCAAACCTCACAAAGAGGACTGA 2277 0.4466 MESKEDGVSNGGGDMLHDIENEGILLDGKDGIRRNWSGFSERNMSYAEPLLAKRTNTTSQIAIIGANLSPIESLDYEIFENEIFNQDWRSRKKIQIIQYVILKWGFALIIGLGTGLVGLFNNISVENIAGFKLLLTTNLMSQNRYLEAFVAYAGISVILAAAAGSLCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSVLGVSAGFVVGKEGPMNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAAIQFCATGRCGLFGEGGLIMYDVGSSKVTYSTGDVLAAILLGVIGGVLGSVYNYLVDKVVRTYSIINEKGAIYKIILVVAIALLTSCCYYFLPWIATCKPCPTNTSVICPSVDESGEYKSFQCKPGYYNDLASLFLNTNDDAIRNLFSSRITKEFHISNLFIYFGTIFFLGIATYGIAVPSGLFIPVILAGAAYGRLVGRLFEPIVKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADGFNKGVYEQILKIKGLPYMESHAEPYMRTLAARDVVSGPLVTFSGIEKVGNILHALESTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFTKDRVFMSRSISQRISALDFAKAGSGKGLKLEDLDINEEEKSMYADLHPISNASPYTVIETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHILGLYPGIKPHKED 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121042g00002 758 Pfam CBS domain 693 740 IPR000644 -
Stsc121042g00002 758 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 PRINTS Chloride channel signature 172 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 Pfam Voltage gated chloride channel 160 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc121042g00002 758 Gene3D - 564 746 IPR046342 -
Stsc121042g00002 758 Gene3D Clc chloride channel 94 563 - -
Stsc121042g00002 758 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 743 - -
Stsc121042g00002 758 SUPERFAMILY CBS-domain pair 566 741 IPR046342 -
Stsc121042g00002 758 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 224 746 - -
Stsc121042g00002 758 SUPERFAMILY Clc chloride channel 81 565 IPR014743 -
Stsc121042g00002 758 PRINTS Plant CLC chloride channel signature 77 85 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc121042g00002 758 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc121042g00002 758 ProSiteProfiles CBS domain profile. 690 757 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121042g00002 Stsc-Chr121042 32556 36855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121042g00002 17 756 Ion Channels AT5G49890 69.599 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121042g00002 K05016 - gmx:100809070 1141.33