Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121040g00018 ATGGATTTGAGTGAAAGAATGCAGGGAGTGAAGAGCATGATGATGATGATGGGATCTCGTGACTACATGGAAGCATTGGAAGATGAGCGCCGCAAGATTCAAGTCTTCTCAAAAGAGCTTCCTCTTTCCTTGGACCTCGTCACACAAGCCATTGAAGCATGTAGGCAGCAGTTGTCTGGGACAACCACGGAGTACAACATCAATGGACATATGAATATGAATAATCATTCGGAATGTTCGGAGCAGACAACTTCAACTGATAATGGTCCTGTCTTGGAGGAGTTTATCCCAATTAAGAAGAGACCATCATCTTCTAATCAAGATGATTATGATTATGATGATGATGATGAAGATGAGCAACATTCACATCATCATCGGCGTAAGATCTCAAAGGATGATAATAATGGTAACAATAAGAACAGTGATAAAAGGAAATCAGATTGGCTTAGATCGGTTCAGTTGTGGAATAATCCAGAACAACCCTCCTTATCACCTCAACAGGAGGTGAATAATAATAAGAAAGGCGGTGCGGTGGAAGTGAAAAGAAGTGGAAGTGGTGGTGCTTTTCAGCCATTCCACAAGGATAAGGAGGAGAGAGTAGGTGGTGGTGGTGGCAAGGCAATTCCAAGTGATGATCTGAAACCACCGTGTTCCTCCGCCCCCGCAGGCAGCAAGAATAATAGTAATAATAATAACAAGGAAGATAAAGATGGACAGAGGAAGCAACGGCGTTGCTGGTCTCAGGAGTTACACAAGCGATTCTTACAAGCCCTTCAACAACTTGGTGGCCCTGATTCTGCCACACCAAAGCAAATCAGGGAGCTAATGAAAGTTGATGGCCTCACTAATGACGAAGTCAAAAGCCATTTGCAGAAATACCGGTTACACACTAGAAGACCTAGTCCCATGGTTCACAACAATGCCAATCCTCAAACGACACCCTTTGTCTTAGTAGGCAACATTTTTGTTCAACAGCCGGAATTCGCCGCAGCCGTGGCCACATCAGCAGATCTGGCCACGACTGCGGCCCCAGCTGGAATATATGCCCCGATAGCTACACATCCTCCTCCGCCTCTTCCCGGTTCGACCAGAAAATCGCAGTTGAAGAGATCATCATCAAATCATCATTCACACTCGGAAGAAGATAGGGCTAATAATCATAATCATAATCATAATCATCTTCAGAGTCATTCAAATTCTCCAGCTTCATCATCATCCACACATACCACCACAACTACTTCCCCTGCCTATTGA 1254 0.4442 MDLSERMQGVKSMMMMMGSRDYMEALEDERRKIQVFSKELPLSLDLVTQAIEACRQQLSGTTTEYNINGHMNMNNHSECSEQTTSTDNGPVLEEFIPIKKRPSSSNQDDYDYDDDDEDEQHSHHHRRKISKDDNNGNNKNSDKRKSDWLRSVQLWNNPEQPSLSPQQEVNNNKKGGAVEVKRSGSGGAFQPFHKDKEERVGGGGGKAIPSDDLKPPCSSAPAGSKNNSNNNNKEDKDGQRKQRRCWSQELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPMVHNNANPQTTPFVLVGNIFVQQPEFAAAVATSADLATTAAPAGIYAPIATHPPPPLPGSTRKSQLKRSSSNHHSHSEEDRANNHNHNHNHLQSHSNSPASSSSTHTTTTTSPAY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121040g00018 417 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 296 IPR006447 GO:0003677
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 391 417 - -
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 230 244 - -
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 95 147 - -
Stsc121040g00018 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Stsc121040g00018 417 SUPERFAMILY Homeodomain-like 239 299 IPR009057 -
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 349 417 - -
Stsc121040g00018 417 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Stsc121040g00018 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 19 380 IPR044787 GO:0003700|GO:0006355
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 373 389 - -
Stsc121040g00018 417 Gene3D - 240 298 - -
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 117 147 - -
Stsc121040g00018 417 MobiDBLite consensus disorder prediction 177 244 - -
Stsc121040g00018 417 FunFam Myb family transcription factor 240 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121040g00018 Stsc-Chr121040 64153 66506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121040g00018 1 357 G2-like Transcription Factor Family AT1G68670 44.416 1.45e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc121040g00018 Myb_DNA-binding 4.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121040g00018 - - adu:107468029 536.184