Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121040g00003 ATGCAGTGCAGAGTGCAGAACCAACCAAAAAGCATGGCATCAAGTAGCACAACACCAAAATATGATGTGTTTGTGAGTTTTAGAGGCGAGGACATTCGCAATACTTTTGCTGATCATCTTTTTGATGCTTTACGTAGAAACGGAATTGTTGCATTCAGGGATGATAGGAATCTCATGCAAGGACACCATATCTCCACTGAGCTGATTCAAGCAATTGAAGGATCTCAGGTTTTGATTGCCATCTTCTCTAAGAACTATGCTAACTCTTCATGGTGCTTGCAGGAACTTGCTAAGATGCTAGATTGCAGCACTAAGGTTGCAACACCCATTTTACTGCCTATTTTCTATGATGTGAGTCCGTCCGAGGTTCGTAAACAGACGGGACTCTATGGGAAAGCATTGGTTGAACATGAACAAAGATTCCAGCATGACCCGGAGATGGTGCAGCAATGGAGGGAAGCTCTTGTGCAAGTGGCCAATCTTTCTGGTTGCGATATACAAAATAAGAAGGAGACTGTAGAGATTGAAAAAATTGTTAAAAGGGTTAGAAGCATATTAAGTTGTAATTCATCAAGTGAGGATGGGTTGGTTGGGATGCAATCTCGTGTAGAAGAATTGGAAAGTCTTATTGATTTCAACTCTAATAGTGAAGAAGTTCGGGTTGTAGGCATATGTGGAATGGGCGGGATAGGAAAGTCAACTCTTGCTAGAGTGATATACGGTAGAAACCTTCATCAGTACAGTGCTCGTTGTTTTGTTGATGATATAAGCAAAGTTTTTCGTGAGGATTGTTTGCTTTCTCTACAAAAGCAGTTTATTCATCAAATTACAAATGGAGAGATCTCAGAGATATTCAATCGTTATGAGGCTAATCGTTTGATAAAAACTGCGTTACGCCATCAAAAGTCTCTGATTTTTCTAGATAATGCTGATGAAGTTGGACAATTACAGAAATTGGGTCTGACTCGTGATTGTCTTTGCCCGGGAAGTAGAGTCATAGTAATTTCAAGAGATCGGCATGTCTTGAAATCTTTAGAACCAGATGAGATATACAATGCTCAACTCTTGAACGAGGATGAAGCTCGTCAATTGTTTTGTAGAAAGGCCTTCAAAGAAAATACAATTGTGAGTTGTGATGTCATTGGCAAAGAGTATAGAGACTTGACAGATCTTGCAATAGAATATGCTCAAGGTCTTCCTTTGGCAATTGAAGTTTTGGGGTCATTTCTACGCCATCGTGATATCTCTGAATGGAGAAGTGCCTTGGCCAGCCTCAGAAATAATCCGAAGAAAGAAATTGTAGATATATTTCAAATGAGTTTTGATGCATTAGATCCCCTTGAAAAAGAAATATTTTTGGATATTGCTTGTTTCTTTAAGGACGAATACATAGTTCGTAAGCGAGAACTTTTAAAATATCGTGGTTTTCATCCAGAAATTGGATTAAGTGTTCTTAGTGATAAATCATTAATAACCTTCAATTCTAAGTACGAATTTCTGATGCATGACCTGCTGCGAGAGTTTGGCAGAAGCATAGTTCGACAAAGTGCACCAAATGAGCCATGGAAGTGGAGCAGAATATGGTGCAAAGAGGATTTGCAAAGAATTATGTTTGAAGATACGGAAATGGATGATCTTAAAGCCATAAGATTGGGCGGAGAGTACACTTTTGCTAAAGCAAGAAATACAACATCAACAGGCGAAATATTATCAAGAATGAGACGACTTGAATTTCTCATAATAGAGGGCGGCAATTTTTCTGGAAGCCTTAATAGTATGTCTAATGAATTGCGATATTTCGAATGGGATAATTATCCATTTACATATTTTCCATCAAGTTGCAAACTATCCAAGCTTTTTGAATTGATCTTACGAGACAGCAACATTAAACAATTATGGGAAGGCACAATGTGTTTGGACAATTTGAAGAAATTGGATCTCAGTTACTCCGAAAATCTTGCTAAGACTCCAAACCTTACCGGGGCTCCAAATCTTGAAGAGTTGAGCCTTAGAGGATGTACAAAGCTTAAGCACATACATCCATCAACCGGATACCTAACAAAACTTGTTCGGTTAGATTTGAAGAAGTGCACAAGTTTATTGAGTTTGCCCATCACTGTATTCGGTATAACTTCACTTAGATATGTAGGTATGTATGGTTGCTCAAGGTTATTTAGTGGGAAAAAGTCGGAGAATGGAAGTGAGAGTGCTGTCCAATGCCAATCGACAATATTGTCCATCTTTAGAAGGCTTCAGCTTAGGTTACCATTTCATTTCTTCAACTCTTCTAAAAGCAGATACAATCATTTGTTCTGTCTATGGATGCGTTCTCTGGCTCGTCTAAGCTGCTTGTATTTGCTAGATTTAAGTTATTGTAATTTGCATAGTATCCCTGAGGCCATTGCAACCTTACACCATTTAGAGATCCTAACATTGAGGGGAAACAATATAGTTAGAGTACCTGATTTTATAAACAAGTTACCCAGATTGACAGATTTGAACTTAGATCACTGTAAACGGCTAATGTATATATCTGAGTTCCCATTACCCTTGGTAACAACAAAGCCAGTAAAAGTGGATTATAGAAGATTGACCATGTTCAACTGTCCAAAAGTAGTTGAGAGGATAAGTGGAATGGCACTTTCATGGATGACAAAGTGCATTAAGTTACAGGAGATAGACGAGGAATTCAATCCTAGCCTTGGATTTGTACTTCCAGGAAGTGGAATTCCGAGGTGGTTTAAGCATCAGAGTGAGGGTGGAGATAATTCAATGAGGATAGAGTCATTTCCTAACTTAAATGACAACAAATGGAATGGCATTGCCCTTTGTGCCGAGATACTTATCCAATATAATCCACCTACTGCTTCCGCTTTTGTAGAACAACACAATTTCATTTTCTTGAAAATTTATCATCCGTCATCAAAAGGGACCGTCGAGTTAGCCCTTGTATGTGATGCTGGAGAGAGCAATGTGATGACGCAGGATGAATTGGTTCACCTCTGCTTATTCTATATTCATCGCCAACTATTCATTGAGTTCAAAAAATTCCACTTAATTCAGGAAGAGTTAGGCAGTCTCGAGTTTTCATTCTCCTCACATCTAAGGCGTTTTCATATTGAAGTGAAGAAGTGGGGAATGCGTGTGGTACTCAACGAGGATATGGAAGAACCCAGCTCTGATGGATATTGA 3192 0.3878 MQCRVQNQPKSMASSSTTPKYDVFVSFRGEDIRNTFADHLFDALRRNGIVAFRDDRNLMQGHHISTELIQAIEGSQVLIAIFSKNYANSSWCLQELAKMLDCSTKVATPILLPIFYDVSPSEVRKQTGLYGKALVEHEQRFQHDPEMVQQWREALVQVANLSGCDIQNKKETVEIEKIVKRVRSILSCNSSSEDGLVGMQSRVEELESLIDFNSNSEEVRVVGICGMGGIGKSTLARVIYGRNLHQYSARCFVDDISKVFREDCLLSLQKQFIHQITNGEISEIFNRYEANRLIKTALRHQKSLIFLDNADEVGQLQKLGLTRDCLCPGSRVIVISRDRHVLKSLEPDEIYNAQLLNEDEARQLFCRKAFKENTIVSCDVIGKEYRDLTDLAIEYAQGLPLAIEVLGSFLRHRDISEWRSALASLRNNPKKEIVDIFQMSFDALDPLEKEIFLDIACFFKDEYIVRKRELLKYRGFHPEIGLSVLSDKSLITFNSKYEFLMHDLLREFGRSIVRQSAPNEPWKWSRIWCKEDLQRIMFEDTEMDDLKAIRLGGEYTFAKARNTTSTGEILSRMRRLEFLIIEGGNFSGSLNSMSNELRYFEWDNYPFTYFPSSCKLSKLFELILRDSNIKQLWEGTMCLDNLKKLDLSYSENLAKTPNLTGAPNLEELSLRGCTKLKHIHPSTGYLTKLVRLDLKKCTSLLSLPITVFGITSLRYVGMYGCSRLFSGKKSENGSESAVQCQSTILSIFRRLQLRLPFHFFNSSKSRYNHLFCLWMRSLARLSCLYLLDLSYCNLHSIPEAIATLHHLEILTLRGNNIVRVPDFINKLPRLTDLNLDHCKRLMYISEFPLPLVTTKPVKVDYRRLTMFNCPKVVERISGMALSWMTKCIKLQEIDEEFNPSLGFVLPGSGIPRWFKHQSEGGDNSMRIESFPNLNDNKWNGIALCAEILIQYNPPTASAFVEQHNFIFLKIYHPSSKGTVELALVCDAGESNVMTQDELVHLCLFYIHRQLFIEFKKFHLIQEELGSLEFSFSSHLRRFHIEVKKWGMRVVLNEDMEEPSSDGY 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121040g00003 1063 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 724 IPR044974 GO:0006952
Stsc121040g00003 1063 Gene3D - 14 189 IPR035897 -
Stsc121040g00003 1063 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc121040g00003 1063 Pfam Leucine rich repeat 784 839 IPR001611 GO:0005515
Stsc121040g00003 1063 Pfam Leucine Rich Repeat 618 636 IPR011713 -
Stsc121040g00003 1063 Pfam C-JID domain 905 1055 IPR045344 -
Stsc121040g00003 1063 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
Stsc121040g00003 1063 Gene3D - 190 350 IPR027417 -
Stsc121040g00003 1063 SUPERFAMILY L domain-like 501 905 - -
Stsc121040g00003 1063 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Stsc121040g00003 1063 Gene3D - 355 445 IPR042197 -
Stsc121040g00003 1063 Gene3D Ribonuclease Inhibitor 735 919 IPR032675 -
Stsc121040g00003 1063 Gene3D Ribonuclease Inhibitor 558 734 IPR032675 -
Stsc121040g00003 1063 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Stsc121040g00003 1063 PRINTS Disease resistance protein signature 297 311 - -
Stsc121040g00003 1063 PRINTS Disease resistance protein signature 221 236 - -
Stsc121040g00003 1063 PRINTS Disease resistance protein signature 396 410 - -
Stsc121040g00003 1063 PRINTS Disease resistance protein signature 637 653 - -
Stsc121040g00003 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 455 IPR027417 -
Stsc121040g00003 1063 Pfam NB-ARC domain 206 439 IPR002182 GO:0043531
Stsc121040g00003 1063 SMART till_3 20 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121040g00003 Stsc-Chr121040 14014 18303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121040g00003 16 822 WRKY Transcription Factor Family AT4G12020 27.529 2.21e-65 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121040g00003 - - ahf:112792657 1355.5