Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121039g00013 ATGGGGATTCAGTGCTCCAGATTCATTCCATGTTGTATGAATTCACAAGTTAAGGCATCTGTTCCTGAAACTCCAGATGCTGAAAATGAGGACACAAGTGAGGTCAGTAACTGGCCTATGTTCTGTGAATTTTCGCTCGAGCAACTTAAGAATGCTACGTCTGGTTTTGCTGTTGAGAATATTGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAGCTGGATAATCAAATGAGGATTGCTGTTAAACGATTCAACAGAAATGCCTGGCCTGATTCTCGCCAGTTTTTGGAGGAAGCAAGATCAGTTGGTCAGCTTCGGAATCAGAGACTAGCAAACTTGCTTGGTTGTTGTTGTGAAGGAGATGAAAGGGGAAACACAACCCATGAAATGGGCAATGCGGCTAAGAGTTGTTCTACATCTTGCACAAGCTCTGGAGTACTGTACAAGCTTTCGAGTTTCGGCCTCATGAAAAATAGTAGGGATGGGAAAAGTTACAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACCGGGAGAGTGACGCCGGAAAGTGTAATTTATAGCTTTGGCACTCTTTTGCTGGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATGCCCTTGATTTGATTCGCGACAGAAATCTTCAGATGCTAACAGATTCTTGTCTGGAAGGACAATTTTCTGATGATGATGGGACTGAGTTGGTGCGGCTAGCGTCACGGTGTTTACAGTACGAACCTCGAGAACGGCCTAATCCAAAATCGTTAGTAGCTGCATTGGCTCCTCTTCAAAAGGAAACAGAGGTTCTTTCACATGTCTTGATGGGAATTCCACATAGTGCTGCTACTTTTTCTTCATTGTCTCCACTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAAACTTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTCCAGATGTGGACTGATCAAATGCAGGAGACATTAAATTGTAAGAAAAAGGGAGACGTTGCTTTCCGGCAGAAAGATTTTAAACTAGCAATTGAATGCTACACACAGTTCATTGACGGCGGAACGATGGTTTCTCCTACGGTCTATGCACGGCGCAGTCTGTGTTATCTCATTAGCGACATGTATCAAGAAGCGCTGAACGATGCAGTGCAAACAAGAGTGATTTCCCCTGTATGGCACATTGCATTTTATCTTGAATCTGTTGCACTTGGAGGACTTGGAATGGAGAATGAAGCACAAGTAGCAATTAAAGAAGCTACAACACTTGAAGCTAAGAGGAGTTCAAATGCTAAACAAAAGTGA 1353 0.4316 MGIQCSRFIPCCMNSQVKASVPETPDAENEDTSEVSNWPMFCEFSLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLDNQMRIAVKRFNRNAWPDSRQFLEEARSVGQLRNQRLANLLGCCCEGDERGNTTHEMGNAAKSCSTSCTSSGVLYKLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVLSHVLMGIPHSAATFSSLSPLGEACSRKDLTAIHEVLEKLGYKDDEGVANELSFQMWTDQMQETLNCKKKGDVAFRQKDFKLAIECYTQFIDGGTMVSPTVYARRSLCYLISDMYQEALNDAVQTRVISPVWHIAFYLESVALGGLGMENEAQVAIKEATTLEAKRSSNAKQK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121039g00013 450 Gene3D Tetratricopeptide repeat domain 338 450 IPR011990 GO:0005515
Stsc121039g00013 450 FunFam probable serine/threonine-protein kinase At4g35230 31 131 - -
Stsc121039g00013 450 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 154 444 IPR045845 GO:0004672|GO:0009742
Stsc121039g00013 450 SUPERFAMILY Protein kinase-like (PK-like) 33 276 IPR011009 -
Stsc121039g00013 450 FunFam probable serine/threonine-protein kinase At4g35230 339 448 - -
Stsc121039g00013 450 Pfam Protein tyrosine and serine/threonine kinase 152 267 IPR001245 GO:0004672|GO:0006468
Stsc121039g00013 450 SUPERFAMILY TPR-like 342 440 IPR011990 GO:0005515
Stsc121039g00013 450 Gene3D Transferase(Phosphotransferase) domain 1 137 286 - -
Stsc121039g00013 450 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121039g00013 Stsc-Chr121039 57515 60759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121039g00013 44 273 Receptor kinase-like Gene Family AT3G58690 26.599 1.05e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc121039g00013 PK_Tyr_Ser-Thr 2.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121039g00013 K14500 - gmx:100781311 751.51