Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121037g00007 ATGGAAACATCAGCAGCCAGCTGGTTATCTGAGTTGGAAATTGATGAGGATTACAATTTATTTCCCGAGCTTGATTTTGATGTAGTCGATGAGGAAGATTTTATTTCACATGAGTTAATAGCAAGTGATGACCTTCAAGGGAAGGCAACATTACAGGACCAATGTTTATCTGCGGAGTGCAATTCCAAAACCATAATAAGCAATTCTTGCAGCGATGAAACCACCAGTTTTGAAGAGATGCTGAGAAGCTTCAATGATGAAAGCTTTTCACCAAAACTTTCTTCATCTTCTTCAGTTTTATCTTTCAAGTCTCATCAGATTCTATCCTTTGATAACTCAGACTCCTTATCATCGTCTCCTCCTAATAATTCTACACAATTTTATCGGCTAAAAAATACCTTAAACCAAACGCAAGACATGGAGGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGCTAGGGGACTCAATCAAGTATGTGAAAGAGCTTAAAGAGCGTTTAGCAGTGCTGGAACAAGAATGCAAGAAAACAAAGACTTTGCCTACTCCTATGCGAAGATCAGATACTGAATCATGCGAAGATCAGAGCATTGATGCTGCTGCTTCTTCTTATGGTAAAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATAGTGAATCATCATCACTACCATCACTTCCGCAAGTGGAAGCAAGAGAGTGTGGCCAAGAACTGTTGCTTCGAATCCATTGCTTCAAGGAAGAGGACATTTTGGTCAAAATCTTTTCTCACATTCAAAGCCTTCGCTTGATGGTTCTTAATAGCAGTGTCTTATCCTTTGGAGATTCCATTCTTGACATAACCATCGTTGTTCAGGCTGGCGAAGGTTACAACTTGACCCTAAATGAAGTTGTCAAGAACCTACGCATGGCGGCGTTGAAATTCCTGTCGTAG 1029 0.3878 METSAASWLSELEIDEDYNLFPELDFDVVDEEDFISHELIASDDLQGKATLQDQCLSAECNSKTIISNSCSDETTSFEEMLRSFNDESFSPKLSSSSSVLSFKSHQILSFDNSDSLSSSPPNNSTQFYRLKNTLNQTQDMEDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIKYVKELKERLAVLEQECKKTKTLPTPMRRSDTESCEDQSIDAAASSYGKGNNNNNNNNNNNNNNNNNDSESSSLPSLPQVEARECGQELLLRIHCFKEEDILVKIFSHIQSLRLMVLNSSVLSFGDSILDITIVVQAGEGYNLTLNEVVKNLRMAALKFLS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121037g00007 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Stsc121037g00007 342 Gene3D - 131 203 IPR036638 GO:0046983
Stsc121037g00007 342 MobiDBLite consensus disorder prediction 225 259 - -
Stsc121037g00007 342 PANTHER BHLH TRANSCRIPTION FACTOR 19 339 - -
Stsc121037g00007 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 202 IPR036638 GO:0046983
Stsc121037g00007 342 Coils Coil 184 204 - -
Stsc121037g00007 342 Pfam Helix-loop-helix DNA-binding domain 143 187 IPR011598 GO:0046983
Stsc121037g00007 342 SMART finulus 144 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121037g00007 Stsc-Chr121037 31940 40144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121037g00007 89 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.985 5.63e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121037g00007 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121037g00007 - - aip:107617512 386.341