Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121037g00003 ATGCCTCCATCTCCATTTTCAACCTCTCTCTCAAGTCTTAGACACAGATCCTCAGTTCCGCCCGCTCCCCCGTGGCTCTGCGTCGTCCCAGCCTTGCCGTCGTTGTGTCTCGAAATTGATGAGGATTACAATTTCTTTCCCGAGCTTGATTTTGATGTAGTCGGTCAGGAAGATTTTCTTTCACATGAGTTAATAGCAAGTGATGACCTTCAAGGGAAGGCAACACTGAAGGACCAATCTTTATCTGGGGAGTGTAATTCCAAAACCATGAGCAATTCTTGCACCGATGAAATTACCAGTTTTGAGGAGATGTTGAGAAGTTTCAATGATGAAAGCTTTTCACCAAAACTTTCTTCATCTTCTTCAGTTTTATCTTTCAAGTCTCATCAGATTCTATCCTTTGATAACTCAGACTCTTTATCATCTTCTCCTCCCAATAATTCGTCACAGTTTTATGGCTTGAAAAACACCTTAAACCAAAATCAAGAAATGGAGGTTTCACTGCCATTTCAAACTACTCCAAATAATAATAATAATAATAACAACAACAACAACATTGATTCCCTGAAGACACAAAATTGGGAAGCAAAGAGTAGCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCAGGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCTCTTATTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACTCAATCAAGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTGGAACAAGAATGCAACAAAGCAAAGACTTTAACTAATCCTATTCGAAGATCAGATACTGAATCATGCGAAGATCAGAGCATTGATGCTGCTGCTTCTTCTTATGGTAAAGGAAATAATAATAATAATAATAATAATAATAATAATGATAGTGAATCATCATCACTACCATCACTTCCGCAAGTGGAAGCAAGAGAGTGTGGCCAAGAACTGTTGCTTCGAATCCATTGCTTCAAGGAAGAGGACATTTTGGTCAAAATCTTTTCTCACATTCAAAGCCTTCGCTTGATGGTTCTTAATAGCAGTGTCTTATCCTTTGGAGATTCCATTCTTGACATAACCATCGTTGTTCAGGCTGGCGAAGGTTACAGCTTGACCCTAAATGAAGTGGTCAAGAACCTACGCATGGCTACGTTGAAATTCATATCTTAA 1221 0.3997 MPPSPFSTSLSSLRHRSSVPPAPPWLCVVPALPSLCLEIDEDYNFFPELDFDVVGQEDFLSHELIASDDLQGKATLKDQSLSGECNSKTMSNSCTDEITSFEEMLRSFNDESFSPKLSSSSSVLSFKSHQILSFDNSDSLSSSPPNNSSQFYGLKNTLNQNQEMEVSLPFQTTPNNNNNNNNNNNIDSLKTQNWEAKSSSTLGKRSPSHAQDHIIAERKRREKISQSFIALAALIPGLKKMDKASVLGDSIKYVKELKERLAVLEQECNKAKTLTNPIRRSDTESCEDQSIDAAASSYGKGNNNNNNNNNNNDSESSSLPSLPQVEARECGQELLLRIHCFKEEDILVKIFSHIQSLRLMVLNSSVLSFGDSILDITIVVQAGEGYSLTLNEVVKNLRMATLKFIS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121037g00003 406 Coils Coil 254 274 - -
Stsc121037g00003 406 Pfam Helix-loop-helix DNA-binding domain 212 257 IPR011598 GO:0046983
Stsc121037g00003 406 PANTHER BHLH TRANSCRIPTION FACTOR 46 403 - -
Stsc121037g00003 406 SMART finulus 214 263 IPR011598 GO:0046983
Stsc121037g00003 406 MobiDBLite consensus disorder prediction 295 322 - -
Stsc121037g00003 406 Gene3D - 202 273 IPR036638 GO:0046983
Stsc121037g00003 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 272 IPR036638 GO:0046983
Stsc121037g00003 406 MobiDBLite consensus disorder prediction 169 188 - -
Stsc121037g00003 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121037g00003 Stsc-Chr121037 8915 14187 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121037g00003 205 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.566 1.35e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121037g00003 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121037g00003 - - aip:107617512 425.631