Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121036g00007 ATGTCATCTCGCGTTGTAGCGGAGAATGCATTACCGGTCACCAATACTACGCCGTATTTTGGAATGATGGAACTTGATGATTATACGCGGCGCTCAGCCGCCACTGGCGGCTCTCCTACGCTGGGACAGCTCCTGAAGCACGTCGGCGACGTGCGAAAGGAAGTTGTAGGAGACGGCAGCGAGACGCCGGTGCACCAAGCCCTTGAGATTGGTGACGGAACCGGAATGGAGCCACGCTCGCTGCCGTTTGTCCTCTCATTCAGCAATTTGACCTACAGCGTGAAAGTCCGTCGGAAACTGAGCTTCTCGGCGATACTTCCTCGACGCCGGAGCCGTCTCGGCGCGGCAGCGGATTCGGAAGCACCGGCAGTGGGAGACAGCATGTTCTCACGGACCAAGACTCTGCTAAATGATATCTCCGGCGAGGCTCGAGACGGAGAGATCATGGCGGTTCTTGGCGCCAGCGGCTCTGGAAAATCCACCTTGATCGACGCGCTGGCAAATCGCATCGCTAAGGGAAGTCTGAAAGGAACGGTGGCACTGAACGGCGAGGCACTGGATTCTCGCCTCCTGAAGGTGATCTCCGCCTACGTGATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTGGAAGAAACACTCATGTTCGCCGCCGAGTTCCGCTTGCCACGCACACTCTCCAAATCAAAGAAGAAAGCGCGTGTCCAAGCACTGATCGACCAGCTAGGTATCCGAAATGCGGCGAAAACAGTGATCGGCGATGAAGGTCACCGCGGAGTGTCCGGCGGAGAGCGTCGTCGAGTGTCGATCGGAATCGACATAATCCACGACCCTATCATCCTCTTCCTTGACGAGCCAACCTCCGGACTGGACTCAACAAGCGCATTCATGGTGGTGAAGGTTCTACAGAGAATCGCACAGAGTGGAAGCATCGTGATCATGTCCATCCACCAGCCAAGTTACCGAATCTTAGGGCTTCTCGACCGAATGATCTTCCTCTCACAGAACCGAACCGAGTTCGCATTGGACCTCATTCGGGATCTAGAAGGTTCCCCAGGCGGAACACGAAGCCTGGTGGAGTTCAACAAGTCCTGGCAGTCCATGAAGCACCCTGCACCCGCAGCACAGAGTAACGCAGTCCACGACCAAAACGGCATGTCGTTGAAGGAAGCAATAAGCGCAAGCATTTCGCGCGGGAAGCTAGTGTCAGGCGCAACCAACACCAATTCAAATCCTTCTTCAATGGTTCCTACCTTCGCGAACCCGATCTGGATGGAGATGGCTACGTTATCGAAGCGTTCGTTCCTGAACTCTCGAAGAATGCCAGAGCTTTTCGGGATTCGGTTAGGTGCGGTTATGGTCACAGGATTCATCCTAGCAACCATGTTCTGGAAACTCGATAATTCCCCGAAAGGAGTGCAAGAAAGGCTGGGATTCTTCGCATTCGCCATGTCCACAACCTTCTACACCACCGCAGACGCGCTCCCAGTGTTTCTCCAAGAACGCTATATCTTCATGCGCGAAACAGCTTACAACGCATACAGAAGATCCTCCTACCTTGTTTCCCATGCTCTCGTCTCGTTGCCATCGCTGGTGTTCCTCTCATTGACTTTCTCAGCTATCACGTTTTGGGCCGTGGGCCTTGACGGTGGCTTTTCGGGCTTTTTGTTTTACTTTTTGATTATATTGGCTTCTTTTTGGGCCGGGAACTCGTTCGTTACGTTTCTGTCGGGTGTGGTGCCTCATGTTATGCTTGGTTACACAATTGTGGTGGCAATTCTTGCTTACTTCTTGCTCTTCAGTGGCTTCTTCATCAACAGGGATAGGATTCCAAGTTACTGGATATGGTTCCATTACATGTCACTGGTGAAGTACCCTTATGAAGCTGTTCTACAGAACGAGTTTGAGGACCCTGTCAAGTGTTTCGTTAGAGGAGTGCAGATATTTGATAACACGCCGTTAGGGTCGGTGCCGGAGGTGTTGAAGTTGAAGCTCTTGGATAGCATGAGCAACACCCTTGGGACGAAGATCACGAGGTCAACGTGCTTGACCACTGGTGCTGACATTTTGCAGCAGAATGGGGTGACGGATTTGAGCAAGTGGAACTGCTTGTGGGTCACTGTGGCTTGGGGTTTCTTGTTCAGGTTTCTATTCTACTTGTCCTTGTTGGTGGGAAGCAAGAACAAGAGGAGGTGA 2196 0.5269 MSSRVVAENALPVTNTTPYFGMMELDDYTRRSAATGGSPTLGQLLKHVGDVRKEVVGDGSETPVHQALEIGDGTGMEPRSLPFVLSFSNLTYSVKVRRKLSFSAILPRRRSRLGAAADSEAPAVGDSMFSRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGEALDSRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKARVQALIDQLGIRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSQNRTEFALDLIRDLEGSPGGTRSLVEFNKSWQSMKHPAPAAQSNAVHDQNGMSLKEAISASISRGKLVSGATNTNSNPSSMVPTFANPIWMEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWKLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRSSYLVSHALVSLPSLVFLSLTFSAITFWAVGLDGGFSGFLFYFLIILASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYMSLVKYPYEAVLQNEFEDPVKCFVRGVQIFDNTPLGSVPEVLKLKLLDSMSNTLGTKITRSTCLTTGADILQQNGVTDLSKWNCLWVTVAWGFLFRFLFYLSLLVGSKNKRR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121036g00007 731 FunFam ABC transporter G family member 6 125 345 - -
Stsc121036g00007 731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 360 IPR003439 GO:0005524
Stsc121036g00007 731 Gene3D - 127 343 IPR027417 -
Stsc121036g00007 731 SMART AAA_5 145 348 IPR003593 GO:0016887
Stsc121036g00007 731 CDD ABCG_EPDR 84 340 - -
Stsc121036g00007 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 339 IPR027417 -
Stsc121036g00007 731 Pfam ABC transporter 136 288 IPR003439 GO:0005524
Stsc121036g00007 731 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 66 337 - -
Stsc121036g00007 731 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524|GO:0016887
Stsc121036g00007 731 Pfam ABC-2 type transporter 428 635 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121036g00007 Stsc-Chr121036 27781 30054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121036g00007 135 320 Calmodulin-binding Proteins AT2G36910 31.217 7.20e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121036g00007 K05681 - gmx:100803658 1205.28