Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121035g00005 ATGTCGATCTCCTACTCCGACTTCTTCTCCGACTCCGACCTTTTCTGCGCCGAGGACACTTCCGGAATCATCTCCGAAGATTCGCCGGAATCCTCTTCCTCCTTCTCCGACTTAGGTTCCTTATCTCCGCCACCTCCACCGATGGAGGTGGAGGAGTCCATAGCCGGATTCCTCGAAAACGAAAGAAACTTCGTCCCTGGATTCGAGTATCTCACGAGGTTCCAATCTCACTCGCTGGATGCCTCCGCAAGAGAAGAATCGGTTGCCTGGATTCTCAAGGTGCAGGCTTACTACGGATTTCAGCCGTTGACGGCGTATCTTTCCGTCAACTACATGGATCGATTCTTGAACTCTCGGCAGTTGCCGCAAACAAATGGGTGGCCGCTGCAACTTCTATCTGTTGCATGCTTGTCTCTAGCGGCAAAGATGGAAGAGCCTCTTGTCCCTTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCCAGAACAATTCAAAGGATGGAGCTGCTTGTTCTGGGAGTCTTGGATTGGAGGCTAAGATCAATCACCCCATTTTGCTTCCTCGCTTTCTTTGCTTGCAAGTTGGATTCAACTGGAACTTTTACTGCATTCCTCACTTCACGGGCTACACAAATCATATTATCCAATGTCCAAGAGGCTAGCTTTCTTGCATACTGGCCATCATGCATTGCTGCGGCGGCCATTCTATGTGCAGCTAACGAAATTCCAAATTGGTCCCTCGTGAAGCCGGAGCATGCCGAATCCTGGTGCCAGGGGCTCACAAAAGAGAAAATTAAAGGTTGCTACCAATTAATGCAAGAGCTACTTGTGATTGATACTAATCAGAGGAAGGCTCCTAAGGTGTTACCACAGCTGAGAGTGATGACAACTCGGCCCCGAACGAGGTCAAGTGCTTCCTCATTCTTGTCATCTTCGCCGTCATCATCTTCCTCTTCCTCTACTTCATCCTCTGCATTCTCATTGTCTTATAAAAGGAGGAAATTGAATAACTGTTTGTGGGTAGATGATCACAAAGGAAACGCCCCTTGA 1062 0.4849 MSISYSDFFSDSDLFCAEDTSGIISEDSPESSSSFSDLGSLSPPPPPMEVEESIAGFLENERNFVPGFEYLTRFQSHSLDASAREESVAWILKVQAYYGFQPLTAYLSVNYMDRFLNSRQLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIQRMELLVLGVLDWRLRSITPFCFLAFFACKLDSTGTFTAFLTSRATQIILSNVQEASFLAYWPSCIAAAAILCAANEIPNWSLVKPEHAESWCQGLTKEKIKGCYQLMQELLVIDTNQRKAPKVLPQLRVMTTRPRTRSSASSFLSSSPSSSSSSSTSSSAFSLSYKRRKLNNCLWVDDHKGNAP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121035g00005 353 SMART cyclin_7 89 177 IPR013763 -
Stsc121035g00005 353 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Stsc121035g00005 353 Gene3D - 57 273 - -
Stsc121035g00005 353 PANTHER CYCLINS 57 281 IPR039361 -
Stsc121035g00005 353 MobiDBLite consensus disorder prediction 24 39 - -
Stsc121035g00005 353 FunFam D2/4-type cyclin 67 184 - -
Stsc121035g00005 353 SMART Cyclin_C_2 186 321 IPR004367 -
Stsc121035g00005 353 SUPERFAMILY Cyclin-like 168 282 IPR036915 -
Stsc121035g00005 353 Pfam Cyclin, N-terminal domain 57 183 IPR006671 -
Stsc121035g00005 353 MobiDBLite consensus disorder prediction 23 49 - -
Stsc121035g00005 353 Pfam Cyclin, C-terminal domain 186 291 IPR004367 -
Stsc121035g00005 353 SUPERFAMILY Cyclin-like 47 183 IPR036915 -
Stsc121035g00005 353 CDD CYCLIN_AtCycD-like_rpt1 83 181 - -
Stsc121035g00005 353 Gene3D - 67 184 - -
Stsc121035g00005 353 MobiDBLite consensus disorder prediction 300 330 - -
Stsc121035g00005 353 CDD CYCLIN_AtCycD-like_rpt2 186 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121035g00005 Stsc-Chr121035 28187 31046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121035g00005 1 347 Core Cell Cycle Gene Families AT1G70210 59.599 3.76e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121035g00005 K18810 - gmx:100775224 475.707