Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121034g00005 ATGCATTTAGGTCAAACAGATACAACTTCGGTGAAATGTCTAAACAACAGTATATCTCGATTCATTCATCTGGTTTCTTGTCAAACGGTGAAGCCTGCGCCTTTTCAGAAGATCTGTAATAATATGGTCGGGGTGTTAAAGCGTCTGAAACCCGTGCTCGATGATGTAATGGACTGCAAACTCCCGTTTCACCAAAATTTGTCTAAAGAGTGTGAAGATTTGGATGTGCGGATTAACGAAGCTAGAGACTTCATCGAAAAATGGGGTCCAAAGATGAGCAAGATTCATAGTGTTATACAAAGCAGCACATTGTTGATTAAGTTGCAGAGTAGATCACTTGACATATGTCACATGATAGTTAGATCCCTACAGTCACCTCCGTCTGCTTCGGTTTTGGCTAATCTTCAGAACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGTTTCATATAGAAGAAGCGCTGAGAAACTTAAGAGATAATATTCAACCTTCCAATGAGCTTCTGAAGGAAATTGCCGAGTTACTAAAATTGACATCAAATGAGGAGCTCTTGAAAGAAAGTATCGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGCCAATAAAATGAGAGGGGACTTGGATGAAATCAACGAAATTGTGAATCTTGTCCGCAATTTACGCGATTATGTAATGAAAACTGAGTCCCTTGAATTCAAAACCGGTCTCTCGATCCCTCCATATTTCCGCTGCCCTTTATCGTTGGAACTCATGGTGGATCCTACTCGTCAGAAACTCAGTCATATGAATCTTACTGCCAATTATACTGTCAAAGCTATGATTGCAAATTGGTGTCAGGAAAACAATGTCAAACTCTATAGTAACTTGCAGCTTGATAAATCTGCTTGTAGCACAACCCCTGCAGATCATTCATTGCCTCATGATTTAGCTAATAAATGTGGTTTCAAGTCCCTCTCTAGATCATCTCTTCAAAATGAACATGGAAATGAGAGGCAAAAGGGTGATAATTCTGTCAGATCAAGTGAGGAGTATAATGGATGCCGGAGTGGAACAGTGGAAAAATGTGATCAACAATCATCTGATGTTCACAGCAGAAGTGAATCATTTTCAAGTTCAATATCCAGTAATGATTGCATACTTCCGGTTTCAGGACAGGCGTTGGAAATATCCAATAAGCCACAAAATGTGACAGCATTGTTGGGAGAAATGAAAAATGTGCATTCTGGTAGCAAACAATCAGGGATTTCTTCTCCTCAGGTATCTGGGAATCATTTTGAAAGTCCTGCTTCAAGAATCAGAGGGATGGGAAATGGTAATATTATTATGAATAATTATAGCATTAATAATAATGCTAATCAAAATGATTCAAGAGTTGATTCACATCCTGTTTTGAACTCGGGGACAGGCGAAGTGGCCATTTCATCTCGTGTTAATAAGTTGGTTGAAGAACTTCGCAGCCAATCAGTTGATGTGCAAACCATGGCTGCAGAAGAATTGAGGCTTCTTACAAAGAATGACGTGGAAAACCGTGTTATTGTGGGACAGTGTGGGGCTGTTGAGCCTCTGCTTTTGCTTCTGTATTCGGATGTGAAGATAACACAAGAGCATGCTGTGACTGCTCTGTTGAATTTGTCAATCAATGACGACAACAAGACATTGATCATGGAAGCTGGAGCCATAGAGCCTCTTATCCATGTTTTGAAGACGGGAAATGATGGTGCCAAGGCAAATTCTGCGGCAGCACTGTTCAGCCTCTCTGTAATAGAAAACAATAAAGAAAAAATTGGCCGATCCGGTGCAGTTAAAGCCTTGGTGGATCTTCTTGCCTCGGGAACTCTTAGAGGGAAAAAGGATGCTGCTACGGCTTTATTTAACTTGTCAATATTTCATGATAACAAAGCTCGCATAGTTCAAGCCGGAGCTATTAAGTTTCTGGTTCGGTTGATGGACTCTGCTGATGGAATGGTTGACAAGGCCGTTGCGCTTCTGTCAAACCTGTCAACAATTGCAGAGGGCCGGATAGAAATCGCAAGGGAAGGGGGCATCCCCTTACTAGTTGAAATTGTTGAAACAGGTTCTCCTAGGGGAAAGGAAAATGCGGCTTCGGTTCTGTTACAGTTATGCCTTCATAGTACCAAGTTCTGTACTCTTGTTTTGCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACGCCGAGAGCGAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGCAATCAGCGCGAAGGAGCTTCCGCGAAGGGAAAATCATGA 2298 0.4164 MHLGQTDTTSVKCLNNSISRFIHLVSCQTVKPAPFQKICNNMVGVLKRLKPVLDDVMDCKLPFHQNLSKECEDLDVRINEARDFIEKWGPKMSKIHSVIQSSTLLIKLQSRSLDICHMIVRSLQSPPSASVLANLQNYIQELQCLKKETAMFHIEEALRNLRDNIQPSNELLKEIAELLKLTSNEELLKESIAVEKERLNAEANKMRGDLDEINEIVNLVRNLRDYVMKTESLEFKTGLSIPPYFRCPLSLELMVDPTRQKLSHMNLTANYTVKAMIANWCQENNVKLYSNLQLDKSACSTTPADHSLPHDLANKCGFKSLSRSSLQNEHGNERQKGDNSVRSSEEYNGCRSGTVEKCDQQSSDVHSRSESFSSSISSNDCILPVSGQALEISNKPQNVTALLGEMKNVHSGSKQSGISSPQVSGNHFESPASRIRGMGNGNIIMNNYSINNNANQNDSRVDSHPVLNSGTGEVAISSRVNKLVEELRSQSVDVQTMAAEELRLLTKNDVENRVIVGQCGAVEPLLLLLYSDVKITQEHAVTALLNLSINDDNKTLIMEAGAIEPLIHVLKTGNDGAKANSAAALFSLSVIENNKEKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHDNKARIVQAGAIKFLVRLMDSADGMVDKAVALLSNLSTIAEGRIEIAREGGIPLLVEIVETGSPRGKENAASVLLQLCLHSTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGASAKGKS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121034g00005 765 Gene3D - 445 554 IPR011989 -
Stsc121034g00005 765 SUPERFAMILY ARM repeat 480 752 IPR016024 -
Stsc121034g00005 765 Coils Coil 128 148 - -
Stsc121034g00005 765 MobiDBLite consensus disorder prediction 342 377 - -
Stsc121034g00005 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 643 684 IPR000225 GO:0005515
Stsc121034g00005 765 SMART arm_5 509 549 IPR000225 GO:0005515
Stsc121034g00005 765 SMART arm_5 632 671 IPR000225 GO:0005515
Stsc121034g00005 765 SMART arm_5 550 590 IPR000225 GO:0005515
Stsc121034g00005 765 SMART arm_5 591 631 IPR000225 GO:0005515
Stsc121034g00005 765 SMART arm_5 672 712 IPR000225 GO:0005515
Stsc121034g00005 765 MobiDBLite consensus disorder prediction 410 435 - -
Stsc121034g00005 765 Gene3D - 555 658 IPR011989 -
Stsc121034g00005 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Stsc121034g00005 765 PANTHER U BOX DOMAIN-CONTAINING 34 753 - -
Stsc121034g00005 765 Pfam Armadillo/beta-catenin-like repeat 594 630 IPR000225 GO:0005515
Stsc121034g00005 765 Pfam Armadillo/beta-catenin-like repeat 510 548 IPR000225 GO:0005515
Stsc121034g00005 765 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Stsc121034g00005 765 FunFam RING-type E3 ubiquitin transferase 464 758 - -
Stsc121034g00005 765 Gene3D - 659 762 IPR011989 -
Stsc121034g00005 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Stsc121034g00005 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 602 644 IPR000225 GO:0005515
Stsc121034g00005 765 MobiDBLite consensus disorder prediction 323 377 - -
Stsc121034g00005 765 Coils Coil 184 216 - -
Stsc121034g00005 765 MobiDBLite consensus disorder prediction 410 429 - -
Stsc121034g00005 765 Coils Coil 742 762 - -
Stsc121034g00005 765 SUPERFAMILY RING/U-box 239 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121034g00005 Stsc-Chr121034 47835 52352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121034g00005 447 765 U-box Gene Family AT3G54790 66.154 7.52e-131 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121034g00005 - - gmx:100800949 1036.17