Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121031g00015 ATGATGAATTTCCTCAAATACTGCCACGTCATCACCACCGTTATCTTCCTTCTTTCACTCCCCAACATTGCTGCTCAACTAGCACCTCCTCCCTCACCTCAACGAACTGTAGCCAACGAAACCAGCAATGGAAACCCTTCCGTGGCGATCCTTCTTGTGGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGCCACTGCTCTGAAAACTACGTCGTTCCGGGAGGAGCTTCCAATTCTACCAATGCTGCTGCTACTGGTCCACGTGGCGTGGATCCGGAGGTGCTTTCAACGTTTCCAATTATGGTGTATTCCACCGTGAAGCACCTCAAAACGGGTCACACTGCATCATCATCGCTTCAGTGTGCGGTGTGCTTGAGTGAGTTCAAGGACATGGACAACCTAAGACTCTTGCCAAAGTGCTGTCACGTGTTTCACCCTGACTGCATCGACGCGTGGCTTGCTTCTCACGTGACTTGCCCTGTTTGCAGGGCCAAGATGAAGTCCGAAAACATGGAGTTCAAGGTAGAGATTCAGGAGTTGGAGGGAAGTGCCGACCACGTGTTCGATGAAATGTCTGACAGAATGGGTGAGGCTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGTTGTTGAGAAGTGTAATAGGTCTTCAAAGGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTTGAACCGGAGAAGAGCTTGGAGAGGTTCACTCTGAGGTTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGAGAATCATAAGTGTAGTGGTGGTGGTGGCGGGATGAAGCGTTCGGCAAGCTACGATGTCGTTTTGCAAAGTGAAGTTGGTGAAGTTGGTGAAGGAAGTAGTAGTAGTAGTAATAATAATAAGGGGAGTAAGAATGGTAGGTGGGTGCTGTCTATGACACCTCCCTTTGTTTCTCGTGGTTGGGGTCATTTTAGTACTTCTTCTGGGATTCCTAGGTTTTGGGGTTCTTCAGCAGCAAGGGAAGAGAAAGGATGTGAAGGGAGAGCAGGTTTGCAAGTAGTGTGA 1086 0.4945 MMNFLKYCHVITTVIFLLSLPNIAAQLAPPPSPQRTVANETSNGNPSVAILLVVLIFAFFMTGFCAVYIRHCSENYVVPGGASNSTNAAATGPRGVDPEVLSTFPIMVYSTVKHLKTGHTASSSLQCAVCLSEFKDMDNLRLLPKCCHVFHPDCIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGSADHVFDEMSDRMGEASCDGNEGGVGEGVVEKCNRSSKVRAFGLLVRSHSTGHSLVEPEKSLERFTLRLPEELRKQILEENHKCSGGGGGMKRSASYDVVLQSEVGEVGEGSSSSSNNNKGSKNGRWVLSMTPPFVSRGWGHFSTSSGIPRFWGSSAAREEKGCEGRAGLQVV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121031g00015 361 CDD RING-H2_EL5-like 126 169 - -
Stsc121031g00015 361 SMART ring_2 127 168 IPR001841 -
Stsc121031g00015 361 MobiDBLite consensus disorder prediction 295 313 - -
Stsc121031g00015 361 MobiDBLite consensus disorder prediction 294 313 - -
Stsc121031g00015 361 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Stsc121031g00015 361 PANTHER RING FINGER DOMAIN-CONTAINING 27 172 - -
Stsc121031g00015 361 SUPERFAMILY RING/U-box 118 173 - -
Stsc121031g00015 361 Coils Coil 169 189 - -
Stsc121031g00015 361 FunFam E3 ubiquitin-protein ligase ATL6 84 175 - -
Stsc121031g00015 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 175 IPR013083 -
Stsc121031g00015 361 Pfam Ring finger domain 126 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121031g00015 Stsc-Chr121031 71200 73476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121031g00015 11 326 Rapid Response to Elicitors AT3G05200 34.535 1.16e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121031g00015 K10664 - fve:101295180 226.868