Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121031g00011 ATGACTCCGCCTCCACCGACGCCGGTGGATAACAACTCCGACTCCCCCGCTACCTGCGGGGAGTCTCAGAGATCCATTCCGACTCCCTTTCTCACTAAGACCTACCAGCTCGTTGAGGACCAATCCATCGATGACGTCATCTCCTGGAACGACGACGGATCCACCTTCATCGTCTGGAATCCTACCGTCTTCGCCAGGGACCTTCTTCCTAAGTATTTCAAACACAATAATTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGATTTAGAAAAGTCGTACCTGATCGGNNNNNNNNNNAGTGTTTTCGCCGGGGGGAGAAGCGCCTCCTCTGCGAGATTCAGCGCCGGAAGATCTCTACGCCGTCACCGTCTCCTTCTCCAACGGCTGCCGCGGTTGCCACCGCCACCGTCGCGGTTCCTTCTCCGATGCCGTTGACCGCCATACCGACGGCGATGCCGATCATATCTCCGTCTAACTCCGGCGAGGAGCAGGTGATATCGTCTAGCTCTTCGCCGTCTCGAGCACCGGCGGAGCTTCTCGACGAGAACGAGAGGCTACGGAAGGAGAACGTGCAGCTCACGAAGGAGCTCGCCGAGATGAGATCGCTTTGCAATAACATATTCTCTCTGATGTCGAATTACGCCACTACCAACGCCACCGCAACTACCACCACAAACAACAGCAACAGCAACCAAATCGATATAAGCGCCCAAGGAAGCAGAGATTCTGCGTTCACGGCGGTGAGGCCGCTAGATTTGATGCCGGTAAAGAGGAGTTCCGGCGGGGAATCGTGGACGGAGACTGCGACGGCGATGATGGTGGAGGAGATGAATCCGAAGCTCTTTGGCGTGGCGATTGGAGCAAAGCGTGCGAGAGAAGGTGGTGGTGGTAGTGGTGGTGAAGGAGTAGGAGGAGGAGGTAGCGTTGGTGGAAGAGAAGGGGAGGAGGATACGCTGCTGCGCCTTCATCAGCCGGGGCATGCGGACGTGAAATCAGAGCCGTTAGATTGCCAGAACCATCGCGATAGTAGTAATCAGGGGACACCATGGCTGAATCAGTGCCACAGAGCGAATCAGAGAGTTTGCAATTAA 1095 0.5525 MTPPPPTPVDNNSDSPATCGESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRXXXXCFRRGEKRLLCEIQRRKISTPSPSPSPTAAAVATATVAVPSPMPLTAIPTAMPIISPSNSGEEQVISSSSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIFSLMSNYATTNATATTTTNNSNSNQIDISAQGSRDSAFTAVRPLDLMPVKRSSGGESWTETATAMMVEEMNPKLFGVAIGAKRAREGGGGSGGEGVGGGGSVGGREGEEDTLLRLHQPGHADVKSEPLDCQNHRDSSNQGTPWLNQCHRANQRVCN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121031g00011 364 MobiDBLite consensus disorder prediction 155 177 - -
Stsc121031g00011 364 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 Gene3D - 22 118 IPR036388 -
Stsc121031g00011 364 MobiDBLite consensus disorder prediction 155 179 - -
Stsc121031g00011 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 231 IPR027725 -
Stsc121031g00011 364 MobiDBLite consensus disorder prediction 292 352 - -
Stsc121031g00011 364 Pfam HSF-type DNA-binding 30 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 Coils Coil 184 204 - -
Stsc121031g00011 364 MobiDBLite consensus disorder prediction 1 23 - -
Stsc121031g00011 364 SUPERFAMILY "Winged helix" DNA-binding domain 27 117 IPR036390 -
Stsc121031g00011 364 FunFam Heat stress transcription factor B-4 22 118 - -
Stsc121031g00011 364 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 SMART hsfneu3 26 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121031g00011 364 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121031g00011 Stsc-Chr121031 55746 57658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121031g00011 22 364 HSF AT5G62020 45.000 3.92e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc121031g00011 HSF_DNA-bind 9.5e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121031g00011 K09419 - gmx:100812267 421.394