Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121031g00005 ATGCCTGGTTTCTCAGCTTTTGAGTTACCTCTTTCTTCTCCTCTCATTTCAATAATGTCAAAGCAAAATTCCCCTACCTTGTCTTTCTCCAATAGGGAAATGATGGAGGGTCACAGTGAGATGGGTCTTATGGGAGATCATTTCGATGGCGGCACACTCCTAATCAAATTCAGGAGCTTGAAGCGTATGGCTTTATCAAATTCTGCATTCTTTCTTTTTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACCCAAATGAAGACACAAATTGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAAGCTCCGAGCTGAGAACAGTGTCATGAGGGAAGCTATGGCAAATCCAATGTGCAACAACTGCGGTGGCACTGCCATTCCAGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGATTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAGCAAGTTTCTTGGCAGGCCAATCTCGTCACTGGCCAGCCCCATGTCTTTTCCTGGCTCAAACTCTGGTCTAGAGCTCGGTATTGGAAGGAATGGGTTTAGTGGTGGTTCTAGTGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACCTTCCGGGGAGCACTCTGCCTTCACTTGCCGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAGTCCATGTGGAGAGATCTATGCTATTGGAACTCGCATTAGTGGCTATGGACGAATTAATCAAGATGGCTCAGGCTGAGAGCCCACTTTGGATTAAGAGTGAGGATGGGGGGAAGGAAATTCTTAACCATGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTTCAACATCTCCGGGGTATGTAACTGAAGCTTCAAGAGAAACCGGTGTAGTAATAATCAACGGTTCATCCCTCGTTGAAACAATGATGGACCCGGATCGATGGTCGGAGATGTTTCCTTCGATGATTTCTAGAGCTGTAACCCTGGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTAGTTCCTGTTCGCCAATTGACCTTCCTGAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGACGCTTCGATCGATGCTGGTCACAATTTTAAGAGGCTTCCATCGGGCTTTCTTGTGCAAGATACACCCAACGGTTTCTCCCAGGCAAATATTACTTGGGTTGAACATTCCCAGTATGATGAGAGTGTCATTCACCAACTCTATAGGCCGTTGATTACTTCCGGCCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTTCAAAGGCAGTGTGAATCCTTGGCAATCCACATGTCCTCTTCAATCACAAGCGAGGACCCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTCTCTGGGATTTGTCTTTCTTCCTCGCAAAGATGGGAGACACACCATCTTGGCAATGTTGGTGATGACATGAAAGTGATGACCAGGAAGAACATTGATGTCCCCGGTGAGCCTCCTAGCATTGTCCTGTGTGCAGCCACTTCGGTTTGGATGCCGGTGTCGCGGCAGAGGGTGTTCGATTTCTTGCGTGACGAACGGATGAGAGGCGAGTGGGTCATCTTATCCGGCATTGGACAGATGAAGGAGATGCTTCGCATTTCCAAAGGACAAGTTGATGGAAATTCCATATCTGTCCTTCGTGCTAATGCTAATAATAGCAGCGAGGGCAGCAACAACTCGCTGTTTTTGCAGGAGACATGGAATGATACTTCGTGCTCGGCGATGGTGTATTCGCCGGTTGAGGTGGAATCACTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCTCTCATTCCTTCAGGCTTTACCATTCATCCAGATGGTCATTCAGGCACGGACGAGGGTGAGGACGGCGGCAGGGGCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTAAACAGCCTCCCGACAGCGAAGCTCACGGCGGAGTCAGTTGAAACTGTGAACGAGCTCATCACAGGCACCATTCAGAAGATCAAAGCTGCACTAGGAGTTGCATAG 2220 0.4761 MPGFSAFELPLSSPLISIMSKQNSPTLSFSNREMMEGHSEMGLMGDHFDGGTLLIKFRSLKRMALSNSAFFLFFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENEKLRAENSVMREAMANPMCNNCGGTAIPGQISFDEHQIRIENARLKDELNRICALASKFLGRPISSLASPMSFPGSNSGLELGIGRNGFSGGSSGLGMSMGLDFGDLPGSTLPSLAGIRSPMGLMGNEVHVERSMLLELALVAMDELIKMAQAESPLWIKSEDGGKEILNHEEYARMSSFISSTSPGYVTEASRETGVVIINGSSLVETMMDPDRWSEMFPSMISRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLTFLRFCKQHAEGVWAVVDASIDAGHNFKRLPSGFLVQDTPNGFSQANITWVEHSQYDESVIHQLYRPLITSGLGFGAPRWIATLQRQCESLAIHMSSSITSEDPTAISPAGRRSMLKLAQRMANNFFSGICLSSSQRWETHHLGNVGDDMKVMTRKNIDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSISVLRANANNSSEGSNNSLFLQETWNDTSCSAMVYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTDEGEDGGRGGCLLTVGLQILLNSLPTAKLTAESVETVNELITGTIQKIKAALGVA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121031g00005 739 Pfam START domain 266 481 IPR002913 GO:0008289
Stsc121031g00005 739 ProSiteProfiles START domain profile. 256 484 IPR002913 GO:0008289
Stsc121031g00005 739 CDD homeodomain 74 114 IPR001356 GO:0003677
Stsc121031g00005 739 Pfam Homeodomain 74 112 IPR001356 GO:0003677
Stsc121031g00005 739 Coils Coil 108 143 - -
Stsc121031g00005 739 SMART START_1 265 481 IPR002913 GO:0008289
Stsc121031g00005 739 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Stsc121031g00005 739 SMART HOX_1 56 118 IPR001356 GO:0003677
Stsc121031g00005 739 SUPERFAMILY Homeodomain-like 72 114 IPR009057 -
Stsc121031g00005 739 CDD START_ArGLABRA2_like 260 480 - -
Stsc121031g00005 739 ProSiteProfiles 'Homeobox' domain profile. 75 114 IPR001356 GO:0003677
Stsc121031g00005 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 736 IPR042160 -
Stsc121031g00005 739 Gene3D - 58 131 - -
Stsc121031g00005 739 SUPERFAMILY Bet v1-like 509 733 - -
Stsc121031g00005 739 SUPERFAMILY Bet v1-like 259 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121031g00005 Stsc-Chr121031 26946 30785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121031g00005 75 736 Homeobox Transcription Factor Family AT3G61150 56.808 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc121031g00005 START 5.8e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121031g00005 K09338 - gmx:100785102 927.932