Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121031g00003 ATGGGGTTTCTCCGGCGACTCTTCGGCGGAGGTGGAAAGAAGAAGAACCACCATGATGGGTCGGGTCAAAAACCCGGAAAGGAGAAACGGAGCTGGAGCTTTGTGAAGCATAGCACCAGAGATAACAAATCCAACAACAATAACGGCTATGAAAACTTTACCGACAACTTGGACCCCAACAAGCACGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTAGCTGAGGCAGCTCTCGCAGCCGCACACGCCGCAGCAGAGGTTGTCAGGCTTACCAGTGGCGCTGGGGCTGCCACTCCCGCGCAGGTCCAGCTCCGGCTGGCGGGGGAAATCGCCGCCGTGAAAATACAGTCGGCGTTCCGCGGTTACTTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTACAAGCACTGGTGAGAGGCCACATTGTGAGGAAGCAAAGTGCAGATATGCTGAGGCGTATGCAGACATTGGTGCGCCTCCAGGCTCGTGCACGTGCGAGTCGCGTGCACTTGTCTGACAGCATGCCTTCTTTCAAGTCTTCACTTTCTCATTACCCTGTTCCTGAAGATTATGAGCATCCACTTCGTGCTTATAGCACAAAATTTGATGGATCTTCTATCCTCAAGAGATGTTGTTCCAATTCTAATTTTAGGGACATTGAGTTAGAGAGAGCCCGATTCGGTTCCAGTTGGTTAGACAGTTGGATGGAACAAAGTACATGGAGCCAAACTGGCAACGCTTCGGTGAGAAACAGGCACCTTGATGACGAGAAGAGCGACAAGATTCTTGAAGTCGACACTTGGAAGCCGCATATGAATTCCTACAATAACAGTAGCAGCTCATTCAAGGCGCCACAGCGTTATTTCGCTCAGGATTACAACGACAACCTTCTTATGGCATATGAATCCCCATCGAAACGCTCTTCGAAAGCGCTAAATCCAAGTCACTCGTCTAGAGAAGTGTTACCCTTAGGTTCTCCTGGATTCCAGAAAGGAAAAGAAGCGATGATGAGTTCAAGAACCGCAGAGAGTAGTCCGCAAGCATTTTCGGCCTCATCTAGGCTTGGTAATAATGGTGGAAGGAGAGGCCCTTTTACACCAACAAAGAGTGAGTGTTCTTGGGGTTTCTTCAATGGATATACTAGCCACCCAAGTTACATGGCTAACACTGAATCTTCAAGAGCTAAGGTTAGGTCACAAAGTGCTCCAAGGCAAAGGCTTGAGTTTGAAAGATATGGTTCCACAAGAAGAAGTTTTCAGAATCTTTGGGATGCAAGACCTAATCCAAGCCCAACCTCAAGCCAATTTAACTGA 1323 0.4958 MGFLRRLFGGGGKKKNHHDGSGQKPGKEKRSWSFVKHSTRDNKSNNNNGYENFTDNLDPNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGAGAATPAQVQLRLAGEIAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQARARASRVHLSDSMPSFKSSLSHYPVPEDYEHPLRAYSTKFDGSSILKRCCSNSNFRDIELERARFGSSWLDSWMEQSTWSQTGNASVRNRHLDDEKSDKILEVDTWKPHMNSYNNSSSSFKAPQRYFAQDYNDNLLMAYESPSKRSSKALNPSHSSREVLPLGSPGFQKGKEAMMSSRTAESSPQAFSASSRLGNNGGRRGPFTPTKSECSWGFFNGYTSHPSYMANTESSRAKVRSQSAPRQRLEFERYGSTRRSFQNLWDARPNPSPTSSQFN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 340 362 - -
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 13 32 - -
Stsc121031g00003 440 ProSiteProfiles IQ motif profile. 109 136 IPR000048 GO:0005515
Stsc121031g00003 440 PANTHER IQ-DOMAIN 5-RELATED 15 420 - -
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 308 369 - -
Stsc121031g00003 440 SMART iq_5 130 151 IPR000048 GO:0005515
Stsc121031g00003 440 SMART iq_5 107 129 IPR000048 GO:0005515
Stsc121031g00003 440 Pfam IQ calmodulin-binding motif 132 149 IPR000048 GO:0005515
Stsc121031g00003 440 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Stsc121031g00003 440 ProSiteProfiles IQ motif profile. 132 159 IPR000048 GO:0005515
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 8 32 - -
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 394 416 - -
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 421 440 - -
Stsc121031g00003 440 Pfam Protein of unknown function (DUF4005) 354 422 IPR025064 -
Stsc121031g00003 440 Gene3D - 109 160 - -
Stsc121031g00003 440 MobiDBLite consensus disorder prediction 308 323 - -
Stsc121031g00003 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 153 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121031g00003 Stsc-Chr121031 14138 18867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121031g00003 1 412 IQD Protein Family AT5G62070 46.154 2.79e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121031g00003 - - adu:107491176 565.459