Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121030g00012 ATGATTGATAATTCTGTCCCAAGTTCTCCATATATTGATCCAGATACTCCTAGCAAGATCGAAACAACACGTGGTCTCAACAAGGAGTACAAGAATTTGTCCTGCAGGTCTATGATGAATCCTGCCTCACCGCTCATAAGCAACAACAATGCATTGAAGGATGTAATGGTATGGGGTGGAGGGATTGGAGGTCTTGTAGGGATTGTAAATGAAAGGTTTGTGAACCAACATGGAATCTATTCTTTAGTTCCGAAGTTGCTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTAGTAACAAAACAAGGGGAAGTGTTCTGTTGGGGTGAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATAGACACTAGCTCCCCGAAAATAGTTGATTCTCTTTACGGTATTCGTATAAAACAGGTCACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGAATGATGTTTGTTGTTTGGATTTGGTTAATGAAGGCCGGATCAAAAGTCAATGGATACCACATAAACTTTCAGGTCCTCTAGATGGTATTAGCATTTCAAGCATTGCTTGTGGAGAATGGCACACTGCAATTGTCTCTAGCTGTGGAAAATTATTTACATATGGAGATGGTACCTTCGGAGTTCTTGGCCATGGAAATCTTCAGAGCTATTCTCGACCGAAACAGGTAGAGTCTCTTAGCGGTCTAAGGGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCTGCAATTGTTGAAGTCATAGTTGATCACTTTAGGTATAATACTACAACAGGCAAGCTGTTTACTTGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAACAAGCTTGTGCCGACTTGTGTTTCGCAACTTATTGACTATGATTTTGTTCAAGTAAGTTGTGGAAGAATGCTGACTGTAGCACTTACCAAAATGGGGAAAGTATTTGCAATGGGAAGCGCAAGACATGGACAGCTCGGAAATCCCCACGCCAGGGATAGAGCAGTAATGGTTGAAGGACAGCTTAAACAGGAGTTTGTTAAAGTGATTTCGGCTGGTTCATATCATGTTGCTGTTTTGACTTCGGCTGGAAGTGTTTACACATGGGGCAAAGGTGAAAATGGTCAACTTGGACTAAGTGATACTGAAGACAGATACACGCCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAAGTAGAAACAATAACTTGCGGATCAAGTTTCACGGCTGCAATCTGTTTGCACAAACCGATTTCTATCAGTGACCAGTCAGCGTGTAGTGGGTGTAGGCTGCCGTTTGGATTCACAAGGAAGAAGCATAACTGCTATGACTGTGGCCTTCATTTCTGCCGAACTTGTAGTGGTAAAAAGGTTATAAACGCGTCTCTAGCCCCGAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTATGATAGAAGGCAAGGAAGTACACATTCAGCAGTGGCTTTGAAGTCTAGAAATTGCAACTCTCGGCAGCTACACAGACTTCCTGACTTGACTGAAGATAGAGGAGAGACAACTATGGCACAGGGTCCTCTCTTGACACTTGGCCAATCATGTTATAGGAAAAGCATGCCGAGTGGACGAAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTAGAAGATAGTTCTTCTTCTTCTATGTTAGGTGGGTTGGCCCAATGGGGCCAAGTTCCATGTCCTGCCCAATTTAGAATCAATTGTAAAGAGAATTTGGCAGGGCATGTTTCTTCATCAAAAAATAAAGTAACTATTGTTGCCCCACCAAACATAGAGTCTTCGGCATTCAACTTTTCTAGTGCAGAGTCAGATACAACAAAGTCTGATAAGACGCTCATTGAAGAAGTTCAGAGTCTGAGAGCTGAGTTAAAGAGACTTGAAGAACAGTGCGAAATAAAAAACCATAAGATACAAGAGTGTCAACAGAGAATTGAGGAGAGTTGGTCTGTAGCAAAGGAGGAAGCTGCAAAGTCCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCTGTAAGGCTTCATACAATATCAGGAAAAGAGAATGCTGGACAAGAAGGGAAAGTTGGGATACATGAATGCATGCCTAATTTGGCACCCATACATACAGATATGAATAGTCCCAGGGATGGTGGCAACATGGACAGTCTATCTAATTCCCCTATAGTATTCTCAGATTCTTTAAAATCAAAATTTGGGAGAAACATGTTTCTCAAGAACGGTGGAGCAACGGAAAATTCTAGCATCGCTAAACCGCAGTCGCAGCAAGACAATGCTGACAGCATGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCTTGTGGGAGGAAGGGCCTTAAAAGAGTCAGGTTCAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGGCAGAGTGTACCATAAATATGAGATTGAAGGGTATATAAACAATAGCCAAAGTCAGGTGAAAGGCTAA 2589 0.428 MIDNSVPSSPYIDPDTPSKIETTRGLNKEYKNLSCRSMMNPASPLISNNNALKDVMVWGGGIGGLVGIVNERFVNQHGIYSLVPKLLESTMMLDVQNIALGGKHAALVTKQGEVFCWGEGKWGRLGQKIDIDTSSPKIVDSLYGIRIKQVTCGEYHTCALTDSGEVYAWGNDVCCLDLVNEGRIKSQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGKLFTYGDGTFGVLGHGNLQSYSRPKQVESLSGLRVRSVACGSWHTAAIVEVIVDHFRYNTTTGKLFTWGDGDEGRLGHADNGNKLVPTCVSQLIDYDFVQVSCGRMLTVALTKMGKVFAMGSARHGQLGNPHARDRAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLSDTEDRYTPSFVEALRDRQVETITCGSSFTAAICLHKPISISDQSACSGCRLPFGFTRKKHNCYDCGLHFCRTCSGKKVINASLAPSKSKAFRVCDQCYDRRQGSTHSAVALKSRNCNSRQLHRLPDLTEDRGETTMAQGPLLTLGQSCYRKSMPSGRKDWKNQQESQQHLEDSSSSSMLGGLAQWGQVPCPAQFRINCKENLAGHVSSSKNKVTIVAPPNIESSAFNFSSAESDTTKSDKTLIEEVQSLRAELKRLEEQCEIKNHKIQECQQRIEESWSVAKEEAAKSKAAKEVIKALAVRLHTISGKENAGQEGKVGIHECMPNLAPIHTDMNSPRDGGNMDSLSNSPIVFSDSLKSKFGRNMFLKNGGATENSSIAKPQSQQDNADSMKVEWVEQYEPGVYITFTTLPCGRKGLKRVRFSRKRFSEKEAERWWEENQGRVYHKYEIEGYINNSQSQVKG 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121030g00012 862 Gene3D - 15 178 IPR009091 -
Stsc121030g00012 862 Gene3D - 179 270 IPR009091 -
Stsc121030g00012 862 Gene3D - 272 441 IPR009091 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 333 IPR000408 -
Stsc121030g00012 862 CDD FYVE_like_SF 446 499 - -
Stsc121030g00012 862 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 441 503 IPR017455 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 112 163 IPR000408 -
Stsc121030g00012 862 MobiDBLite consensus disorder prediction 1 24 - -
Stsc121030g00012 862 SMART fyve_4 435 504 IPR000306 GO:0046872
Stsc121030g00012 862 Pfam Regulator of chromosome condensation (RCC1) repeat 385 433 IPR000408 -
Stsc121030g00012 862 Pfam Regulator of chromosome condensation (RCC1) repeat 163 214 IPR000408 -
Stsc121030g00012 862 Pfam Regulator of chromosome condensation (RCC1) repeat 282 330 IPR000408 -
Stsc121030g00012 862 Pfam Regulator of chromosome condensation (RCC1) repeat 219 267 IPR000408 -
Stsc121030g00012 862 Pfam Regulator of chromosome condensation (RCC1) repeat 112 160 IPR000408 -
Stsc121030g00012 862 Pfam FYVE zinc finger 443 501 IPR000306 GO:0046872
Stsc121030g00012 862 SUPERFAMILY FYVE/PHD zinc finger 441 512 IPR011011 -
Stsc121030g00012 862 ProSiteProfiles BRX domain profile. 793 848 IPR013591 -
Stsc121030g00012 862 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 257 267 IPR000408 -
Stsc121030g00012 862 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 48 704 - -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 384 IPR000408 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 270 IPR000408 -
Stsc121030g00012 862 Coils Coil 640 674 - -
Stsc121030g00012 862 SUPERFAMILY RCC1/BLIP-II 53 437 IPR009091 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 114 130 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 380 401 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 323 341 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 205 221 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 221 235 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Stsc121030g00012 862 PRINTS Chromosome condensation regulator RCC1 signature 54 70 IPR000408 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 218 IPR000408 -
Stsc121030g00012 862 Pfam Transcription factor regulating root and shoot growth via Pin3 793 847 IPR013591 -
Stsc121030g00012 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 512 IPR013083 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 53 111 IPR000408 -
Stsc121030g00012 862 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Stsc121030g00012 862 MobiDBLite consensus disorder prediction 553 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121030g00012 Stsc-Chr121030 63346 66441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121030g00012 789 852 Major Intrinsic Protein MIP AT1G31880 45.312 5.48e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121030g00012 - - adu:107481014 1595.48