Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121030g00011 ATGGCACCAGTTTCATTGCCTCCTGGTTTTAGGTTCCACCCCACAGACGAAGAACTGGTTGCTTATTACCTTAAAAGGAAGATCAATGGCCGTAAAATCGATCTGGAGATCATTCCTGAAGTTGATCTATACAAGTGTGAACCATGGGACTTACCAGGGAAGTCGTTGTTGCCGGGTAAGGATTTGGAGTGGTACTTCTTTAGCCCTCGGGACAGGAAGTATCCAAATGGGTCAAGAACCAACAGAGCAACGAAATCTGGGTATTGGAAGGCCACTGGGAAGGACAGGAAGGTAAATTCACAGAGCCGGGCAGTTGGGATGAAGAAAACCCTTGTTTACTACCGAGGCAGGGCTCCTCACGGTTCTCGCACTGGTTGGGTCATGCATGAGTACCGTCTTCATGAGCGGGAATGCGAAACTAATGCTGCTTCTGGCTTGCAGGATGCGTATGCTCTTTGCCGTGTGTTCAAGAAGGCTGCGGTCATAGTCCCCAAAGAGGGACCACATCATCACTATGGCGGTGCCAATAATATCATGATCAATACCCATCATCATCATATGACAAGTAGTAGTGATCAGCACTCATCAAGCATTGACCTCTATTCTGAAGGAAGAGACGACAGCACCAATAATAACTTATTCATGCCATGGGATCATCATAATGCTACTTTACTCGCTGATCATGCCAAATGGCAACACTTTCCATCATCATCATCCTCCTCCTCTTCATTTCTTCCCCATTATGGAGCCCTACCACCTTACCCTCCATCTAAGGTGAATAATGTAGCTGTAGAGTGTGCAAGGATGCAGCAAAGGTTTTCCATGCCTCCATTGGAGGTAGTGGAGGAATTCCCTAATTTGGGAATTTCAGAGCTCAACATGATGACACGTGGCACGACTTCAATGTGTGTGGGAAGCGGGAATAATAACAATGAAACAGATATCTTGCAAGAGATTCTTTCACTTGCTAATGCTAATGCTTCTTCCCAGGAATTCACAAACCATTCACACATATTATTGGGTGGAAACAATGCAAGTTATGCTGTTCCTCATCATGATAATGATTTTGCCTTTAATGCTGGCACAAGTTACAATAACCACGCCCTAAATGATATCAACCCCATGAGATATGAAATCCAAGATCGAAACCTAAGAACAATAGAGATTGGAGATCTTCAAAGCGAGTTCAAGAGCTTTATGGATGAGCAAAAGACGATTCCCATTGAGGATATGTCAAGCTTCCAAACTAACATAGAGGAAAATGAGGTTCAAGAATCTGAGCTACACAATAGCAACAAAGAATTCAGTGAAGCTGACATTGACAATTTCTCAATGGGGTTCATCAACGATGGTGACCCAAATGAGAACTTCATAGATGATGATGACAACATTGATTATTCAAATTCCACAAGCTTTGATGTCCTTGAAGAAACCAAGGTTAGCCATGGAATGTTTGTGGCCACTCGCCCAGTAGCCGACACATTCTTTCACCAGATTGTTCCTTCACAAACCATCAAAGTTCAACTGAATCCGGTGACAATAATGGGCAACAACAATTCTTCCATAGAGATGCTGAAGCATAATGATCAAGAGTCTTTGTTTAAGAAGCTGATGATGATGAAGAAGCCAGCAAATACATTAACAAGTGCTATTGTATTTATCTTTGCCCTGTTGTTGATGCTTTGTGTTTATTTGAAGGAGCAAGTTCAAAATCATTATTATTGGGCATCAAGTGATAATGTTGATCCTGTTAAAGTGAACAAGAAATGTTGCTATGGTGCTAATGGTAGCAGCATGAAGAGAATGAAACAGCTAACTCACAGGATCATTTGGAATCAGCAAGAAAAAGTTTGGTGTGTTGGAATTAAAAGTGGGAAAGGATTTAGTGTGGTGTTGAAGAAAATTGGTATTTTCCTCTCCATATCTTTGGCTCTTTGTACCATGTGGGCTAACCATGTTATAGTTAGTCATTAA 1974 0.4195 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIDLEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLHERECETNAASGLQDAYALCRVFKKAAVIVPKEGPHHHYGGANNIMINTHHHHMTSSSDQHSSSIDLYSEGRDDSTNNNLFMPWDHHNATLLADHAKWQHFPSSSSSSSSFLPHYGALPPYPPSKVNNVAVECARMQQRFSMPPLEVVEEFPNLGISELNMMTRGTTSMCVGSGNNNNETDILQEILSLANANASSQEFTNHSHILLGGNNASYAVPHHDNDFAFNAGTSYNNHALNDINPMRYEIQDRNLRTIEIGDLQSEFKSFMDEQKTIPIEDMSSFQTNIEENEVQESELHNSNKEFSEADIDNFSMGFINDGDPNENFIDDDDNIDYSNSTSFDVLEETKVSHGMFVATRPVADTFFHQIVPSQTIKVQLNPVTIMGNNNSSIEMLKHNDQESLFKKLMMMKKPANTLTSAIVFIFALLLMLCVYLKEQVQNHYYWASSDNVDPVKVNKKCCYGANGSSMKRMKQLTHRIIWNQQEKVWCVGIKSGKGFSVVLKKIGIFLSISLALCTMWANHVIVSH 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121030g00011 657 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Stsc121030g00011 657 FunFam Nac domain-containing protein 86 15 161 - -
Stsc121030g00011 657 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc121030g00011 657 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Stsc121030g00011 657 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 242 - -
Stsc121030g00011 657 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121030g00011 Stsc-Chr121030 57841 61004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121030g00011 1 648 NAC Transcription Factor Family AT1G65910 41.460 1.94e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121030g00011 NAM 7.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121030g00011 - - ahf:112791681 951.044