Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121029g00010 ATGGAGATGGAGGATTTTCTTGAGCATGAAAACAGTGAAATGCGTGTTGTTGCGGACACTGGGCAAAGTTTGGAGTGCATATCAATTGAAAGATCATCTTCTGGGAAACTTCGATTGGAGTGTCCAAAAGGCACTGCCGATGCAGATTTTGGGAAACTAAATGCAAAATTACAGTACATTGAGCAGATGTTGCAAAAGGTCAAACAAGAAGAGAGACTTCGATTGTCTTGTGAATCACCTGTTCGTTCTTGTGCAAAGAAGGAAAGCCAGTGTTCTGTTGATAAATTTCCTGTCATGGTTGAGAATAATCAATCCGATACTCCACACCAGGAAATTCCTTCTTTAGCATCAAGCTTAAATTATACTCATAGTAATCAATCTGGGAGTGTTGATCAGTGTTCCAGACCTTCAGAAGGAGTGATGGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCGCTTTAAACCCCGATTTTTCAATGTTTGATGGAGAAATATGCTTGGACAAGCTATCCATCAGAGAACTTCATGAACTGTTTAAAGTAACTTTTGGTCGGGAAACTACCGTGAAAGACAAGCAGTGGCTGAAAAGGAGGATTGCCATGAGTTTAACAAACTCGCATGATGTTTCAGCAACAACGTTCATTATTAAAGATAACAAAATAATGAGAAAGTGTGAGGACAGTTCTGGAAATGGAGATTCTGAAAATGTAATCTCCATGGACAATCCAGCTGGAGAAGCAGATATTAACTTCAAGCACTCATCTGCTTTGGAGGGTTGTGTAACTGAAGATAATCAAGTTGTTTCTGAAATAAAACCTGGAAAACATGATATGGAAAATGGATTGAGAGTTGAGGATCACCAAAGAGCTGCAAAAAGAATTCGGAAGCCCACCAAGAGATATATTGAAGAGCTCTCTGAAACTGAATCTAGAGAGCCCAACCCCACAACGATGTTAAGTTCGAGTAGAAATTTTGGACCTGGACTTTCTACAACTTCATATGTGAGGCTTTCTAGGGATACTTGTTCAGAGATGAGAACATTTATCACCAGGGTAGACTCACTAGGAGGTTCTGATGTTCAAGTTCCTTGTGTTTCTCGGGTTCGAAGAAGTCATCCAAGGAAAGATATTACATCACTTACGAAGTTCCTTCCAATTGACGTGGCCAAGGATGCAAAATTAGATAATAAGGCTCTTGGAGAAAATGGTTCTTGTGCTGCTAGTGAGAATCCAGAAAAAGTCCTAAAGGCAAGATCCACACCTGGAAAGTTTCAGCCCATGAGAGCAACTGAGACTTTGCCTTCTTCTGAACCTGAGAAAGAGCAGCAGCTTCCAGGAGTAAGCACAAACGAGCCACAGCAGGAATCAAGGACGAAAAGGGCGGATCCACCCAGCCATCCTTCAGAGGACAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGCGCGTGGACTCCGGTCGAGGTAATGAAGTTGGTTGATGGTGTATCGCAGTGTGGCGCTGGGAAGTGGTCGGAGATCAAACGGCTCTCATTTTCATCACACTCATATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAGGCTAGCTTTGCGCAGACCCCGGCAGATGAAGGGATGAACGTGCGGAAGCATGGTACGGCTCCAATTCCTGAGACGATTTTGGTTCGAGTGCGAGAGCTTGCAGGGATGAATTCTCAGGCACCTCCAAATTTTAGCTCAAGAAAGTTGGTAGCTGGTGCTGGGAATGCACACGGACATAGATCAGGGTACTTGTAG 1809 0.4328 MEMEDFLEHENSEMRVVADTGQSLECISIERSSSGKLRLECPKGTADADFGKLNAKLQYIEQMLQKVKQEERLRLSCESPVRSCAKKESQCSVDKFPVMVENNQSDTPHQEIPSLASSLNYTHSNQSGSVDQCSRPSEGVMESGSSASAVYSALNPDFSMFDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSHDVSATTFIIKDNKIMRKCEDSSGNGDSENVISMDNPAGEADINFKHSSALEGCVTEDNQVVSEIKPGKHDMENGLRVEDHQRAAKRIRKPTKRYIEELSETESREPNPTTMLSSSRNFGPGLSTTSYVRLSRDTCSEMRTFITRVDSLGGSDVQVPCVSRVRRSHPRKDITSLTKFLPIDVAKDAKLDNKALGENGSCAASENPEKVLKARSTPGKFQPMRATETLPSSEPEKEQQLPGVSTNEPQQESRTKRADPPSHPSEDNIVTVPTAKGGMRRKHHRAWTPVEVMKLVDGVSQCGAGKWSEIKRLSFSSHSYRTSVDLKDKWRNLLKASFAQTPADEGMNVRKHGTAPIPETILVRVRELAGMNSQAPPNFSSRKLVAGAGNAHGHRSGYL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121029g00010 602 Gene3D - 477 585 - -
Stsc121029g00010 602 MobiDBLite consensus disorder prediction 311 325 - -
Stsc121029g00010 602 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 581 - -
Stsc121029g00010 602 CDD SANT_TRF 488 538 - -
Stsc121029g00010 602 Pfam Myb-like DNA-binding domain 489 537 IPR001005 -
Stsc121029g00010 602 SMART sant 486 539 IPR001005 -
Stsc121029g00010 602 SUPERFAMILY Homeodomain-like 484 550 IPR009057 -
Stsc121029g00010 602 ProSiteProfiles Myb-like domain profile. 490 537 IPR001005 -
Stsc121029g00010 602 MobiDBLite consensus disorder prediction 425 454 - -
Stsc121029g00010 602 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 541 IPR017930 -
Stsc121029g00010 602 MobiDBLite consensus disorder prediction 304 325 - -
Stsc121029g00010 602 MobiDBLite consensus disorder prediction 400 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121029g00010 Stsc-Chr121029 51686 56687 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc121029g00010 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121029g00010 - - adu:107464756 1010.36