Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121029g00009 ATGAACGGAGTTGCTATGGTGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGATGGAGGATTTTCTTGAGCATGAAAACAGTGAAATGCGTGTTGTTGCGGACACTGGGCAAAGTTTGGAGTGCATATCAATTGAAAGATCATCTTCTGGGAAACTTCGATTGGAGTGTCCAAAAGGCACTGCCGATGCAGATTTTGGGAAACTAAATGCAAAATTACAGTACATTGAGCAGATGTTGCAAAAGGTCAAACAAGAAGAGAGACTTCGATTGTCTTGTGAATCACCTGTTCGTTCTTGTGCAAAGAAGGAAAGCCAGTGTTCTGTTGATAAATTTCCTGTCATGGTTGAGAATAATCAATCCGATACTCCACACCAGGAAATTCCTTCTTTAGCATCAAGCTTAAATTATACTCATAGTAATCAATCTGGGAGTGTTGATCAGTGTTCCAGACCTTCAGAAGGAGTGATGGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCGCTTTAAACCCCGATTTTTCAATGTTTGATGGAGAAATATGCTTGGACAAGCTATCCATCAGAGAACTTCATGAACTGTTTAAAGTAACTTTTGGTCGGGAAACTACCGTGAAAGACAAGCAGTGGCTGAAAAGGAGGATTGCCATGAGTTTAACAAACTCGCATGATGTTTCAGCAACAACGTTCATTATTAAAGATAACAAAATAATGAGAAAGTGTGAGGACAGTTCTGGAAATGGAGATTCTGAAAATGTAATCTCCATGGACAATCCAGCTGGAGAAGCAGATATTAACTTCAAGCACTCATCTGCTTTGGAGGGTTGTGTAACTGAAGATAATCAAGTTGTTTCTGAAATAAAACCTGGAAAACATGATATGGAAAATGGATTGAGAGTTGAGGATCACCAAAGAGCTGCAAAAAGAATTCGGAAGCCCACCAAGAGATATATTGAAGAGCTCTCTGAAACTGAATCTAGAGAGCCCAACCCCACAACGATGTTAAGTTCGAGTAGAAATTTTGGACCTGGACTTTCTACAACTTCATATGTGAGGCTTTCTAGGGATACTTGTTCAGAGATGAGAACATTTATCACCAGGGTAGACTCACTAGGAGGTTCTGATGTTCAAGTTCCTTGTGTTTCTCGGGTTCGAAGAAGTCATCCAAGGAAAGATATTACATCACTTACGAAGTTCCTTCCAATTGACGTGGCCAAGGATGCAAAATTAGATAATAAGGCTCTTGGAGAAAATGGTTCTTGTGCTGCTAGTGAGAATCCAGAAAAAGTCCTAAAGGCAAGATCCACACCTGGAAAGTTTCAGCCCATGAGAGCAACTGAGACTTTGCCTTCTTCTGAACCTGAGAAAGAGCAGCAGCTTCCAGGAGTAAGCACAAACGAGCCACAGCAGGAATCAAGGACGAAAAGGGCGGATCCACCCAGCCATCCTTCAGAGGACAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGCGCGTGGACTCCGGTCGAGGTAATGAAGTTGGTTGATGGTGTATCGCAGTGTGGCGCTGGGAAGTGGTCGGAGATCAAACGGCTCTCATTTTCATCACACTCATATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAGGCTAGCTTTGCGCAGACCCCGGCAGATGAAGGGATGAACGTGCGGAAGCATGGTACGGCTCCAATTCCTGAGACGATTTTGGTTCGAGTGCGAGAGCTTGCAGGGATGAATTCTCAGGCACCTCCAAATTTTAGCTCAAGAAAGTTGGTAGCTGGTGCTGGGAATGCACACGGACATAGATCAGGGTACTTGTAG 1875 0.4341 MNGVAMVVEGDGRLVPATDDEVMEMEDFLEHENSEMRVVADTGQSLECISIERSSSGKLRLECPKGTADADFGKLNAKLQYIEQMLQKVKQEERLRLSCESPVRSCAKKESQCSVDKFPVMVENNQSDTPHQEIPSLASSLNYTHSNQSGSVDQCSRPSEGVMESGSSASAVYSALNPDFSMFDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSHDVSATTFIIKDNKIMRKCEDSSGNGDSENVISMDNPAGEADINFKHSSALEGCVTEDNQVVSEIKPGKHDMENGLRVEDHQRAAKRIRKPTKRYIEELSETESREPNPTTMLSSSRNFGPGLSTTSYVRLSRDTCSEMRTFITRVDSLGGSDVQVPCVSRVRRSHPRKDITSLTKFLPIDVAKDAKLDNKALGENGSCAASENPEKVLKARSTPGKFQPMRATETLPSSEPEKEQQLPGVSTNEPQQESRTKRADPPSHPSEDNIVTVPTAKGGMRRKHHRAWTPVEVMKLVDGVSQCGAGKWSEIKRLSFSSHSYRTSVDLKDKWRNLLKASFAQTPADEGMNVRKHGTAPIPETILVRVRELAGMNSQAPPNFSSRKLVAGAGNAHGHRSGYL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121029g00009 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 504 563 IPR017930 -
Stsc121029g00009 624 MobiDBLite consensus disorder prediction 333 347 - -
Stsc121029g00009 624 SMART sant 508 561 IPR001005 -
Stsc121029g00009 624 CDD SANT_TRF 510 560 - -
Stsc121029g00009 624 SUPERFAMILY Homeodomain-like 506 572 IPR009057 -
Stsc121029g00009 624 Gene3D - 499 607 - -
Stsc121029g00009 624 MobiDBLite consensus disorder prediction 447 476 - -
Stsc121029g00009 624 ProSiteProfiles Myb-like domain profile. 512 559 IPR001005 -
Stsc121029g00009 624 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 603 - -
Stsc121029g00009 624 MobiDBLite consensus disorder prediction 422 506 - -
Stsc121029g00009 624 Pfam Myb-like DNA-binding domain 511 559 IPR001005 -
Stsc121029g00009 624 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121029g00009 Stsc-Chr121029 51686 58568 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc121029g00009 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121029g00009 - - adu:107464756 1040.02