LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121029g00005	ATGGATTCATCCAGTGGAAAGCCGCATGATCATTGCAAAGGGAGTGCTGACACAACCGAAACTGTGAGTGAAAGGCAGGAGGATGTTGATGATGCAGAGGAAAAATGCTTAGATATGGTGAGTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGGGTGTAGGGTTGACCAATGGCTTTGTAGAGTTTGAAGTCCTTCGAGCTGAGGATGTCCTACATATGGAGTTTAACAATCCGCAGGAAGCTAGTCACTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTTCTATAAGGCAGGGAAAGAAGTTGAAAAACAGGAAAGGGGAATTTATTCGATACACCTATCTGTGCAACAGACAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAAAGGGTGCACAAGGTTGTAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGGAGAGCTGGAAGTGGGAAATGGTATGTGTCGCGCTTTGTTGACGAACATAACCATGGGGATGCTCCGGCAAGGTACCCACTGGGACCGGAAAGAGTTGTCAATCAAACTGGCGACATGCCAATGGGAGTGGAAGGAGTTGCCAGTCATACTGGCGACATGCCATTGGGACCGGAAAGAGATGTCAATCAAACTAGCAACGTGACAGAGTTGTACAAAGCCAGAGAATCATGCTCGGACATGGCGATTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGTGTGTAGGGTTGACAGATGGGATTGTAGAGTCTGAAGTCCTTCGAGCTGAGGATGCACTGCAGATGGAGTTCAACAATCCACAGGAAGCTAGATGCTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTGCTATAAGGGAGGGAAAGAAGATAAAAAACATTAAAGGGGAATATGTTCGATACACCTATCTCTGCAACAGAGAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAGAGGGAGCACAGGGCTCAAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGAAAAGCTGGCAGTGGGAAATGGTGTGTGTCGCGCTTTGTTGAGGAACATAACCATGAGGTTCTTTCGGCAAGGTACCTGTTGGGACCAGAAAGAGTTGTCAATCAAACTAGTGACATGAAAGAGTTGTACAGAACCAGAGTGGATGCATTTGTGCAACTGTGTAAGCGATTAGCAAAGGCAGCTTGCTTGACGGATGAGGACTACAAGTTGTATACCGATAAGGTTTTGAGGGATGCAATTTTTTTAGAAATGAAGAACGGGTTGGGTGTTGAGGTTGTAAGAGGAAATAATGCCAATGCTGAGTTAGTAAAGGATCCGGGGACAAAGGGAACAGGCCGTGCCAGTGAAGCATCTGTTTCAAAGGGAACAAAGAGACGCAAGTGCAGCACCTGGGGCCGTCTCGAGCATCGCAGGACTAGGTGCCTTACTGGGCTGACATCAGCTGCATTGCCTGCTGAAGATGCCGTACGGGACAGCACTGGTCTCATGCTCCAAAATGGAGAGATGGGTCATCAAGAATTTGTGAAGCGGAAAAGGACAGTTGACCTTCTGGCGTCATTTCCTAAGGTTCTGTGA	1623	0.4707	MDSSSGKPHDHCKGSADTTETVSERQEDVDDAEEKCLDMVSEADDFDRDNVDKGVGLTNGFVEFEVLRAEDVLHMEFNNPQEASHFYNEYGRAKGFSIRQGKKLKNRKGEFIRYTYLCNRQGFRDKKWLEKSDRKRVHKVVTRCGCLAEMRIKRRAGSGKWYVSRFVDEHNHGDAPARYPLGPERVVNQTGDMPMGVEGVASHTGDMPLGPERDVNQTSNVTELYKARESCSDMAIEADDFDRDNVDKCVGLTDGIVESEVLRAEDALQMEFNNPQEARCFYNEYGRAKGFAIREGKKIKNIKGEYVRYTYLCNREGFRDKKWLEKSDRKREHRAQTRCGCLAEMRIKRKAGSGKWCVSRFVEEHNHEVLSARYLLGPERVVNQTSDMKELYRTRVDAFVQLCKRLAKAACLTDEDYKLYTDKVLRDAIFLEMKNGLGVEVVRGNNANAELVKDPGTKGTGRASEASVSKGTKRRKCSTWGRLEHRRTRCLTGLTSAALPAEDAVRDSTGLMLQNGEMGHQEFVKRKRTVDLLASFPKVL	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121029g00005	540	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	16	172	-	-
	Stsc121029g00005	540	MobiDBLite	consensus disorder prediction	1	32	-	-
	Stsc121029g00005	540	Pfam	FAR1 DNA-binding domain	85	172	IPR004330	-
	Stsc121029g00005	540	Pfam	FAR1 DNA-binding domain	281	370	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121029g00005	Stsc-Chr121029	24523	28580	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Stsc121029g00005		FAR1	2.1e-20	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121029g00005	-		-	adu:107464780	768.074