Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121029g00004 ATGATGCACAGGGAAAAATGCTTAGATATGGTGAGTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGGGTGTAGGGTTGACCAATGGCTTTGTAGAGTTTGAAGTCCTTCGAGCTGAGGATGTCCTACATATGGAGTTTAACAATCCGCAGGAAGCTAGTCACTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTTCTATAAGGCAGGGAAAGAAGTTGAAAAACAGGAAAGGGGAATTTATTCGATACACCTATCTGTGCAACAGACAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAAAGGGTGCACAAGGTTGTAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGGAGAGCTGGAAGTGGGAAATGGTATGTGTCGCGCTTTGTTGACGAACATAACCATGGGGATGCTCCGGCAAGGTACCCACTGGGACCGGAAAGAGTTGTCAATCAAACTGGCGACATGCCAATGGGAGTGGAAGGAGTTGCCAGTCATACTGGCGACATGCCATTGGGACCGGAAAGAGATGTCAATCAAACTAGCAACGTGACAGAGTTGTACAAAGCCAGAGAATCATGCTCGGACATGGCGATTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGTGTGTAGGGTTGACAGATGGGATTGTAGAGTCTGAAGTCCTTCGAGCTGAGGATGCACTGCAGATGGAGTTCAACAATCCACAGGAAGCTAGATGCTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTGCTATAAGGGAGGGAAAGAAGATAAAAAACATTAAAGGGGAATATGTTCGATACACCTATCTCTGCAACAGAGAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAGAGGGAGCACAGGGCTCAAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGAAAAGCTGGCAGTGGGAAATGGTGTGTGTCGCGCTTTGTTGAGGAACATAACCATGAGGTTCTTTCGGCAAGGTACCTGTTGGGACCAGAAAGAGTTGTCAATCAAACTAGTGACATGAAAGAGTTGTACAGAACCAGAGTGGATGCATTTGTGCAACTGTGTAAGCGATTAGCAAAGGCAGCTTGCTTGACGGATGAGGACTACAAGTTGTATACCGATAAGGTTTTGAGGGATGCAATTTTTTTAGAAATGAAGAACGGGTTGGGTGTTGAGGTTGTAAGAGGAAATAATGCCAATGCTGAGTTAGTAAAGGATCCGGGGACAAAGGGAACAGGCCGTGCCAGTGAAGCATCTGTTTCAAAGGGAACAAAGAGACGCAAGTGCAGCACCTGGGGCCGTCTCGAGCATCGCAGGACTAGGTGCCTTACTGGGCTGACATCAGCTGCATTGCCTGCTGAAGATGCCGTACGGGACAGCACTGGTCTCATGCTCCAAAATGGAGAGATGGGTCATCAAGAATTTGTGAAGCGGAAAAGGACAGTTGACCTTCTGGCGTCATTTCCTAAGGTTCTGTGA 1536 0.4701 MMHREKCLDMVSEADDFDRDNVDKGVGLTNGFVEFEVLRAEDVLHMEFNNPQEASHFYNEYGRAKGFSIRQGKKLKNRKGEFIRYTYLCNRQGFRDKKWLEKSDRKRVHKVVTRCGCLAEMRIKRRAGSGKWYVSRFVDEHNHGDAPARYPLGPERVVNQTGDMPMGVEGVASHTGDMPLGPERDVNQTSNVTELYKARESCSDMAIEADDFDRDNVDKCVGLTDGIVESEVLRAEDALQMEFNNPQEARCFYNEYGRAKGFAIREGKKIKNIKGEYVRYTYLCNREGFRDKKWLEKSDRKREHRAQTRCGCLAEMRIKRKAGSGKWCVSRFVEEHNHEVLSARYLLGPERVVNQTSDMKELYRTRVDAFVQLCKRLAKAACLTDEDYKLYTDKVLRDAIFLEMKNGLGVEVVRGNNANAELVKDPGTKGTGRASEASVSKGTKRRKCSTWGRLEHRRTRCLTGLTSAALPAEDAVRDSTGLMLQNGEMGHQEFVKRKRTVDLLASFPKVL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121029g00004 511 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 210 347 - -
Stsc121029g00004 511 Pfam FAR1 DNA-binding domain 252 341 IPR004330 -
Stsc121029g00004 511 Pfam FAR1 DNA-binding domain 56 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121029g00004 Stsc-Chr121029 24497 27931 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc121029g00004 FAR1 1.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121029g00004 - - adu:107464780 722.62