Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121029g00003 ATGGTGAGTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGGGTGTAGGGTTGACCAATGGCTTTGTAGAGTTTGAAGTCCTTCGAGCTGAGGATGTCCTACATATGGAGTTTAACAATCCGCAGGAAGCTAGTCACTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTTCTATAAGGCAGGGAAAGAAGTTGAAAAACAGGAAAGGGGAATTTATTCGATACACCTATCTGTGCAACAGACAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAAAGGGTGCACAAGGTTGTAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGGAGAGCTGGAAGTGGGAAATGGTATGTGTCGCGCTTTGTTGACGAACATAACCATGGGGATGCTCCGGCAAGGTACCCACTGGGACCGGAAAGAGTTGTCAATCAAACTGGCGACATGCCAATGGGAGTGGAAGGAGTTGCCAGTCATACTGGCGACATGCCATTGGGACCGGAAAGAGATGTCAATCAAACTAGCAACGTGACAGAGTTGTACAAAGCCAGAGAATCATGCTCGGACATGGCGATTGAAGCCGATGACTTCGACAGGGACAATGTTGACAAGTGTGTAGGGTTGACAGATGGGATTGTAGAGTCTGAAGTCCTTCGAGCTGAGGATGCACTGCAGATGGAGTTCAACAATCCACAGGAAGCTAGATGCTTCTATAATGAGTATGGGCGAGCTAAGGGTTTTGCTATAAGGGAGGGAAAGAAGATAAAAAACATTAAAGGGGAATATGTTCGATACACCTATCTCTGCAACAGAGAAGGATTTAGAGACAAGAAGTGGTTGGAGAAAAGTGATCGCAAGAGGGAGCACAGGGCTCAAACCCGTTGCGGCTGTCTTGCCGAAATGAGGATTAAGAGAAAAGCTGGCAGTGGGAAATGGTGTGTGTCGCGCTTTGTTGAGGAACATAACCATGAGGTTCTTTCGGCAAGGTACCTGTTGGGACCAGAAAGAGTTGTCAATCAAACTAGTGACATGAAAGAGTTGTACAGAACCAGAGTGGATGCATTTGTGCAACTGTGTAAGCGATTAGCAAAGGCAGCTTGCTTGACGGATGAGGACTACAAGTTGTATACCGATAAGGTTTTGAGGGATGCAATTTTTTTAGAAATGAAGAACGGGTTGGGTGTTGAGGTTGTAAGAGGAAATAATGCCAATGCTGAGTTAGTAAAGGATCCGGGGACAAAGGGAACAGGCCGTGCCAGTGAAGCATCTGTTTCAAAGGGAACAAAGAGACGCAAGTGCAGCACCTGGGGCCGTCTCGAGCATCGCAGGACTAGGTGCCTTACTGGGCTGACATCAGCTGCATTGCCTGCTGAAGATGCCGTACGGGACAGCACTGGTCTCATGCTCCAAAATGGAGAGATGGGTCATCAAGAATTTGTGAAGCGGAAAAGGACAGTTGACCTTCTGGCGTCATTTCCTAAGGTTCTGTGA 1509 0.4718 MVSEADDFDRDNVDKGVGLTNGFVEFEVLRAEDVLHMEFNNPQEASHFYNEYGRAKGFSIRQGKKLKNRKGEFIRYTYLCNRQGFRDKKWLEKSDRKRVHKVVTRCGCLAEMRIKRRAGSGKWYVSRFVDEHNHGDAPARYPLGPERVVNQTGDMPMGVEGVASHTGDMPLGPERDVNQTSNVTELYKARESCSDMAIEADDFDRDNVDKCVGLTDGIVESEVLRAEDALQMEFNNPQEARCFYNEYGRAKGFAIREGKKIKNIKGEYVRYTYLCNREGFRDKKWLEKSDRKREHRAQTRCGCLAEMRIKRKAGSGKWCVSRFVEEHNHEVLSARYLLGPERVVNQTSDMKELYRTRVDAFVQLCKRLAKAACLTDEDYKLYTDKVLRDAIFLEMKNGLGVEVVRGNNANAELVKDPGTKGTGRASEASVSKGTKRRKCSTWGRLEHRRTRCLTGLTSAALPAEDAVRDSTGLMLQNGEMGHQEFVKRKRTVDLLASFPKVL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121029g00003 502 Pfam FAR1 DNA-binding domain 47 134 IPR004330 -
Stsc121029g00003 502 Pfam FAR1 DNA-binding domain 243 332 IPR004330 -
Stsc121029g00003 502 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 201 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121029g00003 Stsc-Chr121029 24497 28580 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc121029g00003 FAR1 1.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121029g00003 - - adu:107464780 714.531