Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121029g00002 ATGGCCACTATTTGTGGCTCCATCTGTTTGTCTACTGTCACTGCCTCCGATTGCTTCGTCAATTGGAATGATGCTGAGCTCATTGAAGAAATCATCAAATCAGTGAATACTAGGTTGAAAATTTTGGGTCAAGTTCACTCAAAAAGACTTGTTGGAATTGGCAAATCAATTGCTCGCGTGGAATCATTACTCCGCCAAGATCCAGAAAGTGTCCGAGTGATTGGAATATGGGGGGTAGGTGGCATAGGAAAGACAACAATCGCAGAACAAGTGTATAACCTTCTCCGTGATGAATACGAAGCTGTTGTTTTTCTGCGTAACGTAAGAGAAGTATCACTCAGACGTGGAATAATTAACTTGAAGAATGAACTCTTTTACAGACTCTTAGGTGAAGATCCGAAAATTGAAATGCAAAATGGATTGCCAGCTTATGTTGAGAAGAGAATTGGGCGAATGAAGGTTCTTATTGTTCTTGATGATGTCAATTTGTCAGAGCAGTTTGAAATTCTAGTTGGAAAGCTGGAATTTTTCGGATCAGGGAGTAGAATTCTTGTAACTACAAGAGATCGACAAGTTCTTGCGAAACATGTTCATGTTCATGATACATACAAGGTTGAACCATTGGATTATGATGAAGCACTTGAGCTTTTCAATTTAATTGCTTTTCAACAGGATCAAACCAAAAAGGAGTATACTGTGCCTGCAGAGAGGGTGGTGGTTGATGCAAAAGGAGTTTCTGTTGTTCTTAAGACTCTGGCTGCTCATCTGCTTCGTGGAAAAGATAAGTGGAAATGGGAAAGCGAATTGGAGAAGCTTGGGAATATTTCGAATAATGAGATTTTTGATACGATGAGCCCGAGTTATGATGACTTGGATCAACATGAGAAATCACTACTTTCATATATTGCATCCTTCTTTGATGCAGAGATACCGGTAGCTAAGCCTGAGGATGCTCCTCCTTCTTCATATCCGGAGAAACAAATCATCACCTTCCTTGACACCAAGCTCAAGGAAGGCAGCGAAATCTCGCTAGGACTTCTCCAAGCTATTGAGAAGTCACTGATTTCGTTGGTTGTGTTCTCGGAAAACTATGCGTTTTCGCATTGGTGCTTGGAGGAGTTGTTGAAGATTATGGAGTGTAGAAGAGAACAAGGTCAAATTGTTCTACCTGTGTTCTACAGAGTGGAACCTTCTGATGTGAGGCATCAAAAGGGTGTGTTTTTTGCTGCCTTTGCTAAACAAGAGAACAAGCATGGTAAGCAAAAGGTCCAAACCTGGAGATCTGCTTTTGGGGAAGCTGCTAATATTTCTGGCTTTCATTCAGCAAAATTCCGGAATGATGCTGAGCTTATTGATAAAATTGTCGAATCAGTGAATACGGAGTTGAAAAATATGAGCCAAGTTCACTCAAAAATACTTGTTGGAATTGCTAAAAGAATTGCTCGTGTAGAATCATTATTACGCCAAGAGCCAGAGAGCGTCCGTGTGATTGGGATTCAGGGTATTGGTGGCATTGGAAAGACAACAATTGCAGAAGAAGCGTATAAGCTACTGCATCATGAATATGAAGCTGCTGTTTTTCTACGAAACGTAAGGGATGTATCACTCAGACATGGAATAATCTATTTGAAGAATAAACTATTTTCCAAACTCTTACGCGATAATCTAGAAATTGAAACAAAAAATGGATTGCCTACTGATGTTGAGAAGAGAATTGGTCGTATTAAGGTTCTTATTGTTCTTGATGATGTAGATGAATCACAGCAGTTTGAAAATCTAGTTGGAAAGCTGCAAAGTTTTGGATCAGGAAGTAGAATTATTGTAACCACCAGAGATTGGCAAGTGCTTGCGAAATATGCTCCTGATAGTGCTACATACAAGGTTGAACCATTGGAATTTAATGAAGCACTTCAGCTTTTCAATTTGATAGCATTTCAACACAACCAAGTTGAAAAGGAGTACCTTGAGCAGGCAAAGAGGATCGTCCCTCATGCCCAAGGCATTCCACTGGTTCTTAAGATTTTGGCTCATCAACTTCATGGAAAAAATAAGAGGATTTGGGGAAACAAGTCAGAGAAACTTGACAAGATACAGAAACCATTGGACTCTGGTGTAGAACGTCAACGTTTAAATTTGACTGCTTTTCAACAGAATCAAACCGAAAAGGAGCATATTGTGCTTGCACAGAGGGCCGTGGCTCATGCCAAAGGAATCCCTGTTGTTCTTAAGATTCTGGCTCATCTGCTTCGTGGTAAAGATAAGTGGATTTGGGAAAGAGAAATGGGGAAGCTTGGGAATATTCAGAATAAGAAGGTTTTTGATATAATGAGGCTGAGTTATGATGACTTGGATCTTGATCAGAAATCAATACTTTTGGACATAGCATGCTTTTTTAATGGGATGAAGTTGAAAGTGAAGTACTTGGAAGGTTTGCTAAGTAATGGGAGCTTTCGGGTTCATGCAGCATTGAAAAGACTTGAAGATATATCTTTCATAACCATTTCTAAAGAGGATGAAGTAACAATGCATGACGTTGTAAAAGAAATGGCTTGGGAGATTGTTCGCCACGAATCTATTGAAGACCCTGCCAACCATAGTCGAATATGGAGTCCTGATCACATCTATCATGTACTGAAATATAATCAGGGGAGTGAGGCCATTAGAAGCCTAAAGTTCAGCTATTCCAAAGCAACAGTTAGGGACATGCAGTTTAGCCCTCTTGTATTTTCTAAGATGAGTAAGCTGAGATTTCTTGACTTCTATGGAGAACAAGACCTCTTAAAGTTACCTGAGGGTCTTCAACAGTTGCCAAGTCGGCTAAGATATCTTCGTTGGACTTATTACCCTCTAAATTCATTACCAAAGGAATTTTCTGCAGAGAACCTGGTCATATTGGAATTACCTTATAGTAAAGTGGAAAAGCTTTGGAGTGGGATCCAGAATCTTGAGAAATTGAAGGTCCTTAAGGTTCCATATTCCTCACAGTTGAAGCAGTTTCCAGACTTATCAAGGGCCATCAATCTTGAGATATTGGATCTCAAATATTGTCTTCTGTTGACTCGTGTCCATCCGTCTCTCTTCTCCCTCAACAAGCTTGAGACTTTGGATCTAAGCTGGTGCTCTTCACTTACCAGACTTGAAACCAATGCTCACTTGGCATCCCTTCGTTATCTGAGCCTCTATCACTGCAAAAACTTGAACAAATTCTCAGTGATATCAGAAAACATGACAGAGCTTGATTTGCGACACACATTGATCCGAGGCTTGCCCTCGTCCTTTGGATGTCAAAGCAAACTCGAAAAGCTTCATCTAGCAAACTCTGAAATAAAGAGGATGCCTGATAACATCAAGCTTCTCACTAGTCTGAAATATCTTGACATAAGTGATTGCAAGAATCTTCAAACTCTACCAGAGCTTCCACTCTCTATAGAAACATTAGATGCAGATAACTGCACATCATTGAAGGCCGTGTTTTTCCCAAATATCAGTGAACAGCTAAAGGAAAACAAGAAAAGGGTTTTGTTCTGGAACTGCTTGAAGTTGGAAAAGCAATTTCTCAAGGCTTTGACACTGAATGCTTATATCAACATGGTGAGATTTTCAAACCAATATTTGTCTGCTGCACTAGAACATGACAATGTTGACAATTCAAATGAAGACCCTGAAGCCTCTTATGTGTATCCGGGGAGCATTGTTCCAAAGTGGTTTAGGTTTCAAACAACAACGGATCACCTAACTGTTAATCTCTCTTCAGCACCGTATGCACCCAAATTGGGCTTTATTTTATGCTTCATCGTTCCTGCAGTACCATATGAGGGTGTAAGCTTGGTGTTTACAATCAGTGGTGACGACGAAGATGATGGCAACGAGGTCATCAAGTTGAACGTGGACAGACCAGGGAAGGGGATTTCATGGGATCATGTGATTCTATTCTACGACCAAAGTTGCACTAGCTTCCTAAATGAAAGAGGTAAAGTTCGAAGAATGTTTAAAATCAAGGTGTCAGCTGTGTCACGATTGATTGCACTAAAGCATGTGCCAGTGGAGTTGAAAGGCTTTGGAGTGCACCCAGTAAACCCATTAAAGTATCCTAGTTTTATAGAAAACATGGAAGTGTTGGGTTATCATACTCCTGTAACTTTGAACCAGGTTTCACTGTGGAATGGAATTTGGTCGTGGATTGGATCTCACAATTGA 4197 0.402 MATICGSICLSTVTASDCFVNWNDAELIEEIIKSVNTRLKILGQVHSKRLVGIGKSIARVESLLRQDPESVRVIGIWGVGGIGKTTIAEQVYNLLRDEYEAVVFLRNVREVSLRRGIINLKNELFYRLLGEDPKIEMQNGLPAYVEKRIGRMKVLIVLDDVNLSEQFEILVGKLEFFGSGSRILVTTRDRQVLAKHVHVHDTYKVEPLDYDEALELFNLIAFQQDQTKKEYTVPAERVVVDAKGVSVVLKTLAAHLLRGKDKWKWESELEKLGNISNNEIFDTMSPSYDDLDQHEKSLLSYIASFFDAEIPVAKPEDAPPSSYPEKQIITFLDTKLKEGSEISLGLLQAIEKSLISLVVFSENYAFSHWCLEELLKIMECRREQGQIVLPVFYRVEPSDVRHQKGVFFAAFAKQENKHGKQKVQTWRSAFGEAANISGFHSAKFRNDAELIDKIVESVNTELKNMSQVHSKILVGIAKRIARVESLLRQEPESVRVIGIQGIGGIGKTTIAEEAYKLLHHEYEAAVFLRNVRDVSLRHGIIYLKNKLFSKLLRDNLEIETKNGLPTDVEKRIGRIKVLIVLDDVDESQQFENLVGKLQSFGSGSRIIVTTRDWQVLAKYAPDSATYKVEPLEFNEALQLFNLIAFQHNQVEKEYLEQAKRIVPHAQGIPLVLKILAHQLHGKNKRIWGNKSEKLDKIQKPLDSGVERQRLNLTAFQQNQTEKEHIVLAQRAVAHAKGIPVVLKILAHLLRGKDKWIWEREMGKLGNIQNKKVFDIMRLSYDDLDLDQKSILLDIACFFNGMKLKVKYLEGLLSNGSFRVHAALKRLEDISFITISKEDEVTMHDVVKEMAWEIVRHESIEDPANHSRIWSPDHIYHVLKYNQGSEAIRSLKFSYSKATVRDMQFSPLVFSKMSKLRFLDFYGEQDLLKLPEGLQQLPSRLRYLRWTYYPLNSLPKEFSAENLVILELPYSKVEKLWSGIQNLEKLKVLKVPYSSQLKQFPDLSRAINLEILDLKYCLLLTRVHPSLFSLNKLETLDLSWCSSLTRLETNAHLASLRYLSLYHCKNLNKFSVISENMTELDLRHTLIRGLPSSFGCQSKLEKLHLANSEIKRMPDNIKLLTSLKYLDISDCKNLQTLPELPLSIETLDADNCTSLKAVFFPNISEQLKENKKRVLFWNCLKLEKQFLKALTLNAYINMVRFSNQYLSAALEHDNVDNSNEDPEASYVYPGSIVPKWFRFQTTTDHLTVNLSSAPYAPKLGFILCFIVPAVPYEGVSLVFTISGDDEDDGNEVIKLNVDRPGKGISWDHVILFYDQSCTSFLNERGKVRRMFKIKVSAVSRLIALKHVPVELKGFGVHPVNPLKYPSFIENMEVLGYHTPVTLNQVSLWNGIWSWIGSHN 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121029g00002 1398 Gene3D Ribonuclease Inhibitor 884 1067 IPR032675 -
Stsc121029g00002 1398 Gene3D Ribonuclease Inhibitor 1068 1169 IPR032675 -
Stsc121029g00002 1398 Pfam NB-ARC domain 482 682 IPR002182 GO:0043531
Stsc121029g00002 1398 Pfam NB-ARC domain 60 278 IPR002182 GO:0043531
Stsc121029g00002 1398 Pfam Leucine Rich Repeat 961 980 IPR011713 -
Stsc121029g00002 1398 SUPERFAMILY Toll/Interleukin receptor TIR domain 326 439 IPR035897 -
Stsc121029g00002 1398 FunFam Disease resistance protein (TIR-NBS-LRR class) 321 464 - -
Stsc121029g00002 1398 ProSiteProfiles TIR domain profile. 286 462 IPR000157 GO:0007165
Stsc121029g00002 1398 Gene3D - 208 292 IPR042197 -
Stsc121029g00002 1398 Gene3D - 708 784 IPR042197 -
Stsc121029g00002 1398 Gene3D - 631 707 IPR042197 -
Stsc121029g00002 1398 SUPERFAMILY L domain-like 903 1168 - -
Stsc121029g00002 1398 PRINTS Disease resistance protein signature 1027 1043 - -
Stsc121029g00002 1398 PRINTS Disease resistance protein signature 496 511 - -
Stsc121029g00002 1398 PRINTS Disease resistance protein signature 571 585 - -
Stsc121029g00002 1398 PRINTS Disease resistance protein signature 665 679 - -
Stsc121029g00002 1398 SUPERFAMILY "Winged helix" DNA-binding domain 770 879 IPR036390 -
Stsc121029g00002 1398 Pfam TIR domain 325 468 IPR000157 GO:0007165
Stsc121029g00002 1398 Gene3D - 321 460 IPR035897 -
Stsc121029g00002 1398 Gene3D - 32 204 IPR027417 -
Stsc121029g00002 1398 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 335 697 IPR044974 GO:0006952
Stsc121029g00002 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 695 IPR027417 -
Stsc121029g00002 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 794 IPR027417 -
Stsc121029g00002 1398 Pfam C-JID domain 1228 1333 IPR045344 -
Stsc121029g00002 1398 SMART till_3 277 436 IPR000157 GO:0007165
Stsc121029g00002 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 302 IPR027417 -
Stsc121029g00002 1398 Gene3D - 461 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121029g00002 Stsc-Chr121029 4799 22836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121029g00002 347 676 WRKY Transcription Factor Family AT4G12020 28.097 4.09e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121029g00002 - - adu:107464771 1103.2