Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121028g00004 ATGGGGCGCATTCCATGCTGTGAGAAGGACAATGTGAAAAGGGGACAATGGACTCCTGAGGAAGATAACAAGCTCTCCTCCTACATTGCTCAACATGGCACCCGCAATTGGCGCCTTATCCCCAAGAATGCTGGCCTCCAGAGATGCGGGAAGAGCTGCAGGCTAAGGTGGACAAACTACCTCCGTCCTGACCTTAAACATGGCCAATTCTCTGATTCTGAAGAACAAACTATTGTGAAGCTTCACTCAGTTTTTGGCAACAGGTGGTCACTGATAGCAGCACAGCTGCCAGGACGCACCGACAATGATGTGAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTTTCAGGCATGGGAATTGACCCTGTGACGCACAAGCCATTCTCACACCTAATGGCTGAAATCGCCACAACCTTAGCACCGCCACAGGCAGCACACCTTGCTGAAGCAGCACTTGGCTGCTTCAAAGACGAGGTGCTCCACCTTCTGACCAAGAAGCCAATTAGCTTCCAAGGCCAACACTCAACTATGGCACAAGGGAATAACGCCACAGATTATATTAACTGTAAGCCAGAAGAAAAGGATGACACTGTTGAAAAGATTAAGCTTGGATTATCAAAGGCAATACAAGAAGAACCTGAAATGATGCCCTCAAGTAAGCATTGGGATTCCAGTGCAGCTACATCTGCAAGCTATGCAATGCCATACAGTGTTTTCCCAACAGTGCCTGGGTTTCAGTATAGCCCGGCACCTTTTGGGAGCAAAGGAGATGCATCGCCGTGGAGCCAAAGTGTTTGCACTGGGAGCACATGCACAGCTATGGATCAGCAAAACCAGTTGCATGAAAAACTTGAAAATGGGGATGAGTCCGAGGCTACAAAAGAAATTAGAAACTTTTCCAACATTTTCAACTCTGATTGTGTCTTGTGGGATTTACAAGCAGATGATTTAATAAACCCAATGGTATAA 972 0.4681 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPISFQGQHSTMAQGNNATDYINCKPEEKDDTVEKIKLGLSKAIQEEPEMMPSSKHWDSSAATSASYAMPYSVFPTVPGFQYSPAPFGSKGDASPWSQSVCTGSTCTAMDQQNQLHEKLENGDESEATKEIRNFSNIFNSDCVLWDLQADDLINPMV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121028g00004 323 FunFam transcription factor MYB80 69 129 - -
Stsc121028g00004 323 FunFam Transcription factor RAX3 7 67 - -
Stsc121028g00004 323 SMART sant 13 63 IPR001005 -
Stsc121028g00004 323 SMART sant 66 114 IPR001005 -
Stsc121028g00004 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc121028g00004 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc121028g00004 323 CDD SANT 17 61 IPR001005 -
Stsc121028g00004 323 CDD SANT 70 112 IPR001005 -
Stsc121028g00004 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc121028g00004 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc121028g00004 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc121028g00004 323 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Stsc121028g00004 323 PANTHER F14D16.11-RELATED 1 321 - -
Stsc121028g00004 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc121028g00004 323 Gene3D - 14 66 - -
Stsc121028g00004 323 Gene3D - 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121028g00004 Stsc-Chr121028 25437 26608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121028g00004 1 323 MYB Transcription Factor Family AT5G56110 58.282 2.03e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121028g00004 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121028g00004 K09422 - gmx:100800764 590.497