Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121025g00002 ATGAATATGATGAGAAGGCTGAAGAGCATTGCTTCTGGCAGGACATCCATTTCTTCAGATCCTGGAGCCGATTCTAGCACAAAAAGAGCTAAGTTTGATGAAGAAACCACGGGGAAGGTCAATGATGAAATGAATACCGTAGACAATGGCAGCAAAGATCAGGAACATTTCGTAGATGCACAAATGGATGATGCTGTTGGCACATCCGATGTATCTATGATAGATAAAAATGAAAAGTCAGGTTTTGATCAACTTCCAAAAGAATTACATGAAATGAAGATTGGCGACGAGAAAAGGAAAAAGAACAATGAGAAGGATGTAGAAACACCTATGGTGAGTGGCAATGGAACGGAAACAGGTCAAATAATTACAACTGCTATTGGTGGCCGAGATGGGCAACCAAAGCAGACAATATCTTACATGGCTGAACGCGTGGTTGGAACTGGTTCTTTTGGAGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGCGAACCGGTTGCCATAAAGAAGGTGTTGCAAGACAAGAGATATAAGAATAGGGAACTTCAGGTTATGCGCATGCTTGAGCATCCTAATGTTGTACGCCTAAAGCACTGTTTCTTTTCAACTACGGATAAGGATGAGTTGTACCTCAACCTGGTTTTGGAGTATGTGCCAGAAACTGTTTACAAGGTTTCAAAGCAGTTTATTAGGATGCACCAATATATGCCCATACTTAATGTCCAACTTTATACATATCAGATTTGCCGTGCATTGAATTATTTACATGAAGTGATTGGCGTCTGTCATCGTGACATCAAGCCCCAGAACTTATTGGTCAATCCACAGACCCATGAGTTGAAGATATGTGATTTCGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAATATATCATACATATGCTCGAGGTACTATAGGGCCCCAGAACTGATATTTGGCGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTTCTTGGACAGCCATTGTTTCCAGGAGAGAGTGGTGTTGATCAGTTAGTAGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAACGAATTCAAGTTCCCTCAGATTAAAGCGCACCCGTGGCACAAGGTTTTCAACAAGAGAATGCCGCCTGAAGCAGTGGATCTTGTGTCAAGACTACTTCAATATTCACCAAATCTACGTTGTACTGCGTTGGCTGCATGTGCACACCCATTCTTCGATGATCTACGAGACCCGAATGCATGCCTGCCAAATGGGCGACCACTGCCACCATTGTTCAATTTCACTGAAGCAGAACTGGCAAATGCACCCGATGAATTGCGTCAACGTCTCATTCCCGAGCATGCAAGGAGTTCGAGCTGA 1416 0.4322 MNMMRRLKSIASGRTSISSDPGADSSTKRAKFDEETTGKVNDEMNTVDNGSKDQEHFVDAQMDDAVGTSDVSMIDKNEKSGFDQLPKELHEMKIGDEKRKKNNEKDVETPMVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDKRYKNRELQVMRMLEHPNVVRLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKQFIRMHQYMPILNVQLYTYQICRALNYLHEVIGVCHRDIKPQNLLVNPQTHELKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFNKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDDLRDPNACLPNGRPLPPLFNFTEAELANAPDELRQRLIPEHARSSS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121025g00002 471 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Stsc121025g00002 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 106 469 - -
Stsc121025g00002 471 MobiDBLite consensus disorder prediction 9 25 - -
Stsc121025g00002 471 CDD STKc_GSK3 135 427 IPR039192 -
Stsc121025g00002 471 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121025g00002 471 FunFam Shaggy-related protein kinase kappa 220 468 - -
Stsc121025g00002 471 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121025g00002 471 SUPERFAMILY Protein kinase-like (PK-like) 139 450 IPR011009 -
Stsc121025g00002 471 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121025g00002 471 FunFam Glycogen synthase kinase-3 beta 124 219 - -
Stsc121025g00002 471 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Stsc121025g00002 471 MobiDBLite consensus disorder prediction 26 55 - -
Stsc121025g00002 471 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Stsc121025g00002 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Stsc121025g00002 471 MobiDBLite consensus disorder prediction 1 55 - -
Stsc121025g00002 471 MobiDBLite consensus disorder prediction 95 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121025g00002 Stsc-Chr121025 18722 23260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121025g00002 146 427 Core Cell Cycle Gene Families AT1G76540 37.201 1.75e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc121025g00002 Pkinase 4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121025g00002 K27414 - gmx:100811346 837.41