Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121024g00008 ATGTCTAACTTGAATAACTTGTTCAGCAAAATTGGTAGACCAGACCCCAAGCCATATGAACCCTTGATGAGTCAAAGTGATATCTCATTCGTGAATGGAAGGCCAGGGTTTGATAAGTTGTTCCCTTCATTGTATGATGAAAGTGTGGATGATGGAGCTCCTCCACGCCTTTCTTTGGGATCTGACTCTGGAACTAACCTTCAAGACTGCACTTTTACTGCACAAGACACATCTAATTTTAGCGATGTGTACTCTTTTAATTCACAAGACAGTGGAGCACCATCAAGCGAATCTGTTTCGGATGAAGTAGAAACTGAAATGAGAAGACTTAAGCTAGAACTCGAGAAGTCAATGGATCTGTATAGCACAGCTTGCAAGGATGCTTTGGTAGCAAAGCAAAAGGCATTGGAACTTCGAAGGTTGAAAATGCGAGAAAATAAGAAGTTTGACGAGGATCAAACTACTGAAAAAGCAGAACTGGAAGTGGTTGTGAAGGAGAAAGCAAAGTCCAGAGCTGCCTCGGATGCAGCAGAAGTGTCTAGAAAAATAGCAGAGTTGGAAGCTCAGAAAAGAATAAATGCTGAGACGAGAATCAGAGCAGAACCGGAGCCAAAGATGTCAGGAGAGAGTTTCTTATACGGTGGTTCTGCAAGGTACAGAAGATACACGATTGAGGAAATTGAAGCAGCTACAAAAGGCTTCTCAAACGCTCTCAAGGTTGGTGAAGGAGGTTATGGGCCAGTTTACAAGTGTGAACTAGATCACACACAAGTTGCAATCAAAGTGCTAAAGACAAATGCATCTCAAGGATGGTCACAGTTTCACCAAGAGATTGAGGTGCTAAGTTGCATAAGGCATCCACACATGGTTCTTCTGCTTGGAGCATGCCCAGAGATTGGATGCTTAGTTTATGAGTACATGGCTAATGGAAGCTTAGACGATTGCCTGTTCCACAGAGGCAATGCACCAGTGCTTCCATGGCAGTTAAGATTCCGAATTGCTGCTGAGATTGCAACTGCACTTCTTTTCCTACACCAGACAAAGCCAGAGCCACTGGTGCACCGTGACTTGAAACCTGGAAACATTTTGCTTGATAGGAACATGGTGAGCAAGATTGGTGATGTGGGGTTAGCTAGGCTTGTGCCTCCTTCAGTTGCAGACATTGTGACACAATATAGACAGACATCAACTGCAGGAACTTTCTGCTACATTGATCCTGAGTACCAGCAAACAGGGATGCTAGGACTCAAGTCTGATATTTACTCACTGGGAGTGATGCTTCTGCAGATCATAACTGCAAGGTCACCAATGGGTTTGACTCATCAGGTTGCTAAAGCCATTCAGAGAGGCACTTTTGCTGAAATGCTTGACCCTGCTGTTGAGGACTGGCCAGTTCAACATGCCTTGCATTTTGCAAGGATTGGCCTCAGCTGTGCAGAGATGAGAAGAAAAGACAGACCTGATCTTGCAAAAGTTGTGTTGCCTGAGTTAAACAAGCTCAGCCAATTTGCTGAGGAAAACATGCCTATGATGATGATGTTTGGTGTTGGTGCAAGATTCGCTTCTCTGTCTAGAACAAATTCCACAATTCAAGACACAAGTGAAACTCAATCGATCTCTGGAATCTCTGAATGTAGCCACTCAAGCACGCAGTCAATGGAGAAAATTTGA 1671 0.4387 MSNLNNLFSKIGRPDPKPYEPLMSQSDISFVNGRPGFDKLFPSLYDESVDDGAPPRLSLGSDSGTNLQDCTFTAQDTSNFSDVYSFNSQDSGAPSSESVSDEVETEMRRLKLELEKSMDLYSTACKDALVAKQKALELRRLKMRENKKFDEDQTTEKAELEVVVKEKAKSRAASDAAEVSRKIAELEAQKRINAETRIRAEPEPKMSGESFLYGGSARYRRYTIEEIEAATKGFSNALKVGEGGYGPVYKCELDHTQVAIKVLKTNASQGWSQFHQEIEVLSCIRHPHMVLLLGACPEIGCLVYEYMANGSLDDCLFHRGNAPVLPWQLRFRIAAEIATALLFLHQTKPEPLVHRDLKPGNILLDRNMVSKIGDVGLARLVPPSVADIVTQYRQTSTAGTFCYIDPEYQQTGMLGLKSDIYSLGVMLLQIITARSPMGLTHQVAKAIQRGTFAEMLDPAVEDWPVQHALHFARIGLSCAEMRRKDRPDLAKVVLPELNKLSQFAEENMPMMMMFGVGARFASLSRTNSTIQDTSETQSISGISECSHSSTQSMEKI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121024g00008 556 MobiDBLite consensus disorder prediction 529 556 - -
Stsc121024g00008 556 Pfam Protein kinase domain 238 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121024g00008 556 MobiDBLite consensus disorder prediction 1 21 - -
Stsc121024g00008 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Stsc121024g00008 556 Gene3D Phosphorylase Kinase; domain 1 214 306 - -
Stsc121024g00008 556 Coils Coil 169 189 - -
Stsc121024g00008 556 PANTHER OS02G0152300 PROTEIN 49 553 - -
Stsc121024g00008 556 SMART serkin_6 234 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121024g00008 556 FunFam U-box domain-containing protein 51 307 507 - -
Stsc121024g00008 556 Gene3D Transferase(Phosphotransferase) domain 1 307 513 - -
Stsc121024g00008 556 ProSiteProfiles Protein kinase domain profile. 234 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121024g00008 556 Coils Coil 100 120 - -
Stsc121024g00008 556 SUPERFAMILY Protein kinase-like (PK-like) 212 493 IPR011009 -
Stsc121024g00008 556 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 212 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121024g00008 Stsc-Chr121024 55904 58099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121024g00008 19 516 Receptor kinase-like Gene Family AT5G35380 60.317 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc121024g00008 Pkinase 3.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121024g00008 - - ahf:112790757 916.761