Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121024g00006 ATGGCATTCACTCTTAGTAGCTCTTATTGCATCGCATTATCCATTCTTCTCATAGCATGCGCTGTTGTTATTGTTCCCTCTCATGGAGTCACGGTATCAGAACTGCTCCTCGCCGTGAAGGCTAAATTACAGAACACCGAAGAGTTATCTTCATGGAATCCATCTACAACTCCGTGTTCAGGTAGAAAAGCAAACTGGAAAGGTGTTCTGTGCAATAATGAGGGACTAATAACCGGGTTGCAGCTTGAGAACATGGGCCTCAAGGGTGTCATTGATGTCGATTCGCTAAGGGGTTTACCAAATCTTAGAACCATAAGTTTCATGAATAACGAACTTGATGGTCCAATGCCACAAATCAACAAGCTAACTGGTTTTAGGTCGGTGTTCCTTTCCAACAACAAGTTTTCTGATGTGCTTCCTGACAATGCCTTCCAAGGCATGGTATGGTTGAAGAAAATCCATTTGTCAAACAACCAGTTTACAGGTCCTATTCCAGAAGCTTCTCTGCTCAAATTGCCAAGGCTTATAGAGTTGCAGTTGGATGGAAATCAATTCACTGGGCCTGTTCCCAACTTGCCTCATACTTCATTGACCTCAGTTAACTTTGCAAACAACAAGTTACAAGGCCCAATTCCAGATTCCATGTCCAAGATGCCCGCTACTTCCTTTTCTGGTAATGAAGAGTTATGTGGACCACCTTTGGGAGAATGTAAGAACCAGAATCAGAACCAAGACCAGAACCAGATTCAGATCCAGAAGCAGAAAAATGATGAGAAAAGGAAGCACACAACCATGAGCATTGTCGTGGTTGTCATAGCTGTGTTGGTGGCATTGATTGTGATTGGTGTAGTTATATTCATCCTTCTTCACCGTAGAAGACAAGCTAGAGAAGAAGAAGAAGAAGAATCAACGATGGAGAGTCAAGAAATAAGTGCACCGCAACTGAGGAAAGGGAAATCAAAGGAATTTGGAAGTGGGGTCAGAAGCAGGTCATTAAGATCTGTAAGCTCCACCCACAGTTGCAGAAGAACGGATTACATGAAGTTGTCCTTCATAAGGGACGACAGAGAGAGATTCGAGCTGCATGATTTGCTGAGAGCTTCAGCTGAGATCTTGGGAAGTGGATGTTTCAGTTCTTCATACAGGGCTACCCTGCCCAAAGGGCAAATGATAGTGGTGAAGAGGTACAAGCAGATGAACAATTTAGCAAGGGACGAGTTCCATGAACACATGAGAAGGATTGGAAGGTTGAATCACCCAAACTTGCTTCCTCTTGTGGCGTACTACTACAGAAGGGAAGAGAAGCTCTTTGTTACCGACTTAGTCAAGAATGGAAGCTTGGCTGTTCGCCTTCATGGGTACCAAGCTCTTGGGCTAGCAAGTCTTGATTGGGGAGCAAGGTTGAAGATTGTGAAAGGAATAACCAAAGGTCTTCAATACCTATACAAGGACTTGCCAAGCCTTATAGCACCCCATGGAAACCTTAAATCGTGCAATATTCTTCTAACAGAATCTCTTGAGCCACTCCTCTGTGACTATGGATTGATCCCACTTATAAACCAGGAACTCGCCAAGGACGTCTTGGTTGTGTACAATTCCCCAGAGTACTTGAAAAATGGAAGAATCACAAAGAAGAGCGACGTGTGGTGCCTTGGAATCTTGATCCTGGAGATTCTGACTGGCAAGTTCCCTGCGGATTCCTTGCAGCAGGGTAAAGGGAGCGAGATGAATCTGGCAAATTGGGTTCTTTCTGTGGACCCAGAAAAACGGGTCGACGAGGTGTTTGATAAGGAGTTAATGGGAGCGATGAAGAGCAGTGAGGGAGAGATGGTGAGGCTGTTGAATGTTGCCATGGCATGCTGTGAAGAGAATGTGGAGAAAAGGTGGGAGTTGAAAGAAGCAGTTGAGAAGATTGAAGAGATTAGAGAGAAGGATCAAGATGATGATTTCTTCACTGTTGCTTCTGATGCAGATGTAGGGTTTGCAAGGGGTTTGTCTGGTGAACTCAATATCTAG 2016 0.4435 MAFTLSSSYCIALSILLIACAVVIVPSHGVTVSELLLAVKAKLQNTEELSSWNPSTTPCSGRKANWKGVLCNNEGLITGLQLENMGLKGVIDVDSLRGLPNLRTISFMNNELDGPMPQINKLTGFRSVFLSNNKFSDVLPDNAFQGMVWLKKIHLSNNQFTGPIPEASLLKLPRLIELQLDGNQFTGPVPNLPHTSLTSVNFANNKLQGPIPDSMSKMPATSFSGNEELCGPPLGECKNQNQNQDQNQIQIQKQKNDEKRKHTTMSIVVVVIAVLVALIVIGVVIFILLHRRRQAREEEEEESTMESQEISAPQLRKGKSKEFGSGVRSRSLRSVSSTHSCRRTDYMKLSFIRDDRERFELHDLLRASAEILGSGCFSSSYRATLPKGQMIVVKRYKQMNNLARDEFHEHMRRIGRLNHPNLLPLVAYYYRREEKLFVTDLVKNGSLAVRLHGYQALGLASLDWGARLKIVKGITKGLQYLYKDLPSLIAPHGNLKSCNILLTESLEPLLCDYGLIPLINQELAKDVLVVYNSPEYLKNGRITKKSDVWCLGILILEILTGKFPADSLQQGKGSEMNLANWVLSVDPEKRVDEVFDKELMGAMKSSEGEMVRLLNVAMACCEENVEKRWELKEAVEKIEEIREKDQDDDFFTVASDADVGFARGLSGELNI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121024g00006 671 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Stsc121024g00006 671 Gene3D Phosphorylase Kinase; domain 1 332 440 - -
Stsc121024g00006 671 ProSiteProfiles Protein kinase domain profile. 366 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121024g00006 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 646 IPR046959 -
Stsc121024g00006 671 FunFam pollen receptor-like kinase 1 335 441 - -
Stsc121024g00006 671 Coils Coil 624 644 - -
Stsc121024g00006 671 MobiDBLite consensus disorder prediction 236 251 - -
Stsc121024g00006 671 MobiDBLite consensus disorder prediction 216 258 - -
Stsc121024g00006 671 SUPERFAMILY Protein kinase-like (PK-like) 370 642 IPR011009 -
Stsc121024g00006 671 Gene3D Ribonuclease Inhibitor 195 237 IPR032675 -
Stsc121024g00006 671 MobiDBLite consensus disorder prediction 297 331 - -
Stsc121024g00006 671 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Stsc121024g00006 671 FunFam Pollen receptor-like kinase 1 442 652 - -
Stsc121024g00006 671 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Stsc121024g00006 671 Pfam Protein tyrosine and serine/threonine kinase 370 637 IPR001245 GO:0004672|GO:0006468
Stsc121024g00006 671 Gene3D Transferase(Phosphotransferase) domain 1 442 659 - -
Stsc121024g00006 671 SUPERFAMILY L domain-like 40 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121024g00006 Stsc-Chr121024 50857 53196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121024g00006 25 668 Receptor kinase-like Gene Family AT5G35390 49.165 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc121024g00006 PK_Tyr_Ser-Thr 4.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121024g00006 - - aip:107633360 1054.28