Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121024g00002 ATGGGGATTTGCTTCAGCATTGAAGAGCAAAAGCATCACTCGGTCTCCGATTCGAGTTCTAAGCCTCGGCGTCAAGAATATGAATCTGCACCGTCGACGACTCCGTTGAGTTCGATGAATATCAAAGATCTGCGGCAGAGTGCTGGTTACTGCAATGTTCATATATTCACGTACGAGGAGCTGAGGTTAGCGACGAAGTACTTCCGCCCTGACTTGATTCTTGGAGAAGGTGGCTTCGGAGTGGTGTATAAAGGTGTCATTGATGATAGTGTGAGGCCAGGATTCGAGTCCACTCAAGTCGCCATCAAGGAGCTCAATCGTGAAGGATTTCAAGGCGATAGGGAATGGCTCGCTGAAGTTAACTACTTAGGTCAATTCAGTCACCCAAACCTTGTAAAGCTCATTGGATACTGCTGCGAGGATGAACACCGGTTATTAGTCTATGAGTACATGGCAAGTGGCAGCTTGGAGAAACATCTTTTCCGTAGAGTCGGCTCAACCCTAACTTGGTCAAAAAGAATGAAGATTGCTTTACACGCTGCAAGAGGGCTTGCTTTTCTTCACGGTGCAGAAAGGCCCATCATATATCGTGACTTTAAGACATCAAATATTCTGCTAGATGCGGATTTCAACGCAAAGCTTTCAGACTTTGGTCTTGCTAAGGATGGGCCAATGGGGGACCAAACCCATGTTTCAACACGAGTGATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACCGGGCATTTGACAGCTCGAAGTGATGTGTATGGCTTCGGGGTCGTGCTACTTGAATTGCTTATTGGTAGGAGAGCCTTAGACAAGAGTAGGCCCAGCCGGGAGCATAACTTGGTTGAGTGGGCACGGCCACTGTTGAATCATAACAAGAAACTTCTAAAAATTTTAGACCCTAAAATTGAAGGGCAATGTTCTAGTAAAACCGCAATAAAGGTAGCCAATTTGGCATACCAGTGTCTTAGCCAAAACCCGAAAGGCAGACCCCTGATGAGCCAGGTTGTTGAAATTCTTGAAAATTTTCAGTCAAACGGGGAAAATGAGGAAGAACAAATGATTCAAAGTGGCAGCAGCAGCCTAACCATTTATGAGGCTCCGAAGGGTGGCAATGGCAACTCAGCTGAAGGCAAAAACCAAAGTAGAAATAACGAGGTTCATAGGAACGAACGAAGAATAGAAAAAAGCACGAGTCATCCTTCATCGTAA 1227 0.4572 MGICFSIEEQKHHSVSDSSSKPRRQEYESAPSTTPLSSMNIKDLRQSAGYCNVHIFTYEELRLATKYFRPDLILGEGGFGVVYKGVIDDSVRPGFESTQVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQCSSKTAIKVANLAYQCLSQNPKGRPLMSQVVEILENFQSNGENEEEQMIQSGSSSLTIYEAPKGGNGNSAEGKNQSRNNEVHRNERRIEKSTSHPSS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121024g00002 408 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
Stsc121024g00002 408 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Stsc121024g00002 408 Gene3D Transferase(Phosphotransferase) domain 1 151 370 - -
Stsc121024g00002 408 MobiDBLite consensus disorder prediction 359 386 - -
Stsc121024g00002 408 FunFam Serine/threonine-protein kinase BIK1 35 150 - -
Stsc121024g00002 408 MobiDBLite consensus disorder prediction 387 408 - -
Stsc121024g00002 408 CDD STKc_IRAK 74 348 - -
Stsc121024g00002 408 MobiDBLite consensus disorder prediction 11 38 - -
Stsc121024g00002 408 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Stsc121024g00002 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc121024g00002 408 FunFam Probable serine/threonine-protein kinase PBL8 151 364 - -
Stsc121024g00002 408 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121024g00002 408 PANTHER OS01G0588500 PROTEIN-RELATED 26 349 - -
Stsc121024g00002 408 Gene3D Phosphorylase Kinase; domain 1 42 150 - -
Stsc121024g00002 408 MobiDBLite consensus disorder prediction 359 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121024g00002 Stsc-Chr121024 36124 40520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121024g00002 4 345 Glycoside Hydrolase AT3G07070 45.915 2.98e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc121024g00002 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121024g00002 - - gmx:100800465 672.93