Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121023g00012 ATGGGAAACGTTTGTACGTGTCAAGTTTCTATTGGACGAAGAGTGTATGAGGCTGATTCTGATTCTGATTCTGATGCAAATGATGATTATTTACCATATAGATATGGACATTGTGGAGCCAAGGTCATGTTTAGTGGATCCTCTAAATTTGTTTCAATGTATTCTCAAAAGGGTCAAAAGGAAGTTAATCAAGATGCAATGACAGTGTGGGAGAACTTCACCGGAGAAAAAGACATGATATTTTGTGGTGTGTTCGATGGGCATGGTCCTCAAGGGCACAAGTATGCACAAAGTATACGCAATAATCTTCCTTCAAAACTCTCCACATCAATCAAAATGTCACAAAAAATTGGTAAGAGCCAACTTGGATTAGATATCAATAGTGATGAAAACCAAAACATGCCTTGTGTTTCATGGGAAGGAAGCTTTTTGAAGTCTTTTAGTGAAATGGATAAAGATCTTGCTCAGAACGTTTGCATTGGTAGCTTTAGTGGCGGTAGCACTGCTGTCACTATAGTTAAACAGGAAAATCAGTTGATTATTGGTAATTTAGGAGATTCTCGTGCAATTCTTTGCACAAGAACAGATGATAATTATCGTGTTCCTGTTCAACTTACCGTTGACTTAAAACCAACTATTCCAAGTGAAGCTTCAAGAATCACAAAGTGTGGAGGTAGAATCTTTCCATCAAAAGATGATCCAAATGGTATAAATAGAATATGGATGGCTGAAGAAGATTGCCCTGGCTTGGCTATGACAAGATCATTTGGAGATTTTTGCTTAAAACATTATGGCCTCGTCTCAGTTCCTGATGTAATCTATAGAAGAATTAACAATCAAGATGAATTTGTGGTTCTGGCCTCTGATGGAATATGGGATGTGCTAACAAATGAAGAAGTTATTAACATAATTAGTACAGCACCAAAGAGGTCAGAGGCAGCAAAAACATTGGTAAAGCATGCCCTTCAAGCCTGGAGAGTCAAGTGTCCTAATTCAGTTGATGATTGTACAGCTATATGCTTGTTCTTGAATAATTAA 1038 0.3748 MGNVCTCQVSIGRRVYEADSDSDSDANDDYLPYRYGHCGAKVMFSGSSKFVSMYSQKGQKEVNQDAMTVWENFTGEKDMIFCGVFDGHGPQGHKYAQSIRNNLPSKLSTSIKMSQKIGKSQLGLDINSDENQNMPCVSWEGSFLKSFSEMDKDLAQNVCIGSFSGGSTAVTIVKQENQLIIGNLGDSRAILCTRTDDNYRVPVQLTVDLKPTIPSEASRITKCGGRIFPSKDDPNGINRIWMAEEDCPGLAMTRSFGDFCLKHYGLVSVPDVIYRRINNQDEFVVLASDGIWDVLTNEEVINIISTAPKRSEAAKTLVKHALQAWRVKCPNSVDDCTAICLFLNN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121023g00012 345 Pfam Protein phosphatase 2C 58 323 IPR001932 -
Stsc121023g00012 345 CDD PP2Cc 50 343 IPR001932 -
Stsc121023g00012 345 Gene3D - 44 345 IPR036457 -
Stsc121023g00012 345 PANTHER PROTEIN PHOSPHATASE 48 341 IPR015655 GO:0004722|GO:0006470
Stsc121023g00012 345 ProSiteProfiles PPM-type phosphatase domain profile. 50 343 IPR001932 -
Stsc121023g00012 345 SMART PP2C_4 41 341 IPR001932 -
Stsc121023g00012 345 SUPERFAMILY PP2C-like 46 345 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121023g00012 Stsc-Chr121023 72882 75463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121023g00012 1 345 PP2C-type Phosphatase Gene Family AT5G01700 46.821 2.24e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121023g00012 - - vun:114165448 417.927