Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121021g00003 ATGACCATGGAGAATGGTGTTGATGATAGCAGTGATCAGTTCCCTAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCTACTTGCCTAATGGTTCTAGAAACTCTTCTCAGAAGATGTCAATATCATGTTACCACAACAAGCCAAGCAATAAAGGCATTGAAGCTGTTGAGAGAAAACAAGTTTGACCTTGTAATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTTATAATGTTGTCTGCAAATGGTGATACAAAGCTTGTTATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTTCTAAAACCTGTGAGAATTGAAGAGCTGAAGAACATTTGGCAGCATGTGATTAGGAGGAAGAAGTTTGATTCGAAGGAGAAGAACAAAACCAGGAACTCCGACAAGCCTAATTCAGAGACCGGCAATGTGGTAGGGTCAGCAGGAACAGGAAAATCAGAGCAAAATGGGAAGCTGAATAAGAAAAGGAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCGTCAGCCCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGAATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTGACGAGGGAGAATGTGGCAAGCCATCTCCAGAAATATAGGCTTTACCTGAAACGAATCAGCTGCGTGGCGAACCAGCAGGCGAATATGGTGGCGGCCCTAGGAAGCGCGGATCCATCCTACTTGAGAATGGGCTCTATGAGTGGGGTCGGACATTTACAAGCATTGAGTGGCTCAGGACAGTTTCCTAACAATGCTTTCAGGTCCTTTCCGCCGAATGGGATGGTTAGTAGATTGAACACTCCTACTGGATTGAATGTGCATGGATTCCCGTCTTCCGGAGCATTTCACTTGGGTCAATCACAGAATCTAAACAACTCAAGTGTTGAACAGCTCAAGTACCTGTCATCCATTGTTCCTGTTAATCAGAATAGTGTTCATGGAATGCAGGTTCCTATGGGGCTTGATCCATTGCAAAACAATAAGGGTGTTATTCCTGTTCAGAACCTGACCACTGGTATTGATGCTAAAACAAATTTTCCTGTCTCAAATAAGCTCCCGGATCCACAATCTAGAGTAACATCTGGCGCGGATCCCCCGCTTCTTGGTAACTCAAACAATGCCTTGATGTTGGAAGCAAGACCACAAGACACTCAAAGGGTTATAGAATACGAAAACTTAGCTTCTTCGGTACCCTCCCAACATTCGGAACTCCCATTCTCTTTGCTGGATCAAGGTAGATATAGTGATAACTGGTCTAATGCTGTGCAATCATCTGGGATCCAAACTGGTTCTTACCCTTCAAGTGAAAGTTTTAGACAGACAGCGATACCTGCTACGGATAACATGGCTTCTTTACCCTTACAAGAAGGGAATCTGAGTGTTTCTTCATCCATCTCTTTGCTGCCTAACCAATCCTACAATTCATTGATAGATACACACTCCCAATCTGTGATTTTAGCTAATAGAACTGGTCATGTGAGCAATAATGATGTGCCGTTTCAAGGCTGGGATGATCACAATCAAGATGGTAGCTACCCTTCAAATGTTGTTTGTAGCACAATAAACACTGTGACTCCGGTTTCGAGTGCTGTTTGTCACACGCCAATGAACTCAACCTTACACAGGAACTTGGACTTTAACTATGGTGATAGCTTGCAAATGAAGCGCGATGCTGTGGCGAAGTTAGCAGCTAAAGAGACCTCATTGAAGCCTCATCTGGGGAATATCATGAACCAGCAGAAGTCTCAACAGAGTCACTTCTCTAATAATGTTGGTTCCCTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGCAAGATGAGATGAAATTATTGGATGGAGACTTCATTTGTGATAATTACTCAGGTGGCATATCAATGTGA 2046 0.433 MTMENGVDDSSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTRNSDKPNSETGNVVGSAGTGKSEQNGKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMGSMSGVGHLQALSGSGQFPNNAFRSFPPNGMVSRLNTPTGLNVHGFPSSGAFHLGQSQNLNNSSVEQLKYLSSIVPVNQNSVHGMQVPMGLDPLQNNKGVIPVQNLTTGIDAKTNFPVSNKLPDPQSRVTSGADPPLLGNSNNALMLEARPQDTQRVIEYENLASSVPSQHSELPFSLLDQGRYSDNWSNAVQSSGIQTGSYPSSESFRQTAIPATDNMASLPLQEGNLSVSSSISLLPNQSYNSLIDTHSQSVILANRTGHVSNNDVPFQGWDDHNQDGSYPSNVVCSTINTVTPVSSAVCHTPMNSTLHRNLDFNYGDSLQMKRDAVAKLAAKETSLKPHLGNIMNQQKSQQSHFSNNVGSLEDLVSSMMKQEQDEMKLLDGDFICDNYSGGISM 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121021g00003 681 MobiDBLite consensus disorder prediction 150 169 - -
Stsc121021g00003 681 Gene3D - 198 261 - -
Stsc121021g00003 681 FunFam Two-component response regulator 198 261 - -
Stsc121021g00003 681 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Stsc121021g00003 681 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Stsc121021g00003 681 PIRSF RR_ARR_type-B 1 679 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc121021g00003 681 CDD REC_typeB_ARR-like 20 132 - -
Stsc121021g00003 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 345 IPR045279 GO:0009736
Stsc121021g00003 681 SMART REC_2 18 128 IPR001789 GO:0000160
Stsc121021g00003 681 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Stsc121021g00003 681 MobiDBLite consensus disorder prediction 138 202 - -
Stsc121021g00003 681 Gene3D - 18 158 - -
Stsc121021g00003 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Stsc121021g00003 681 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Stsc121021g00003 681 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Stsc121021g00003 681 MobiDBLite consensus disorder prediction 400 420 - -
Stsc121021g00003 681 SUPERFAMILY CheY-like 16 138 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121021g00003 Stsc-Chr121021 39115 43316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121021g00003 1 676 Response Regulator Gene Family AT2G25180 43.208 1.56e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc121021g00003 Response_reg 4.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121021g00003 K14491 - gmx:100809002 967.607