Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121021g00002 ATGGATACATTTCTGAGGATGCTGTCTGCTACAGGGGAGGCTTGTGATGATACAAGCAACAACAAACAACAACCATTATTATTGCAGAGTTCATCACAAGAACATCAAAAGGAGCATCATCATCAGAAAGAGCAACAAGTAGATACTACTTTGCTGGATCTGAATCTGAATGTCCCTCATGATGATGATTGCAGCACAGAGCTGAGCCTCATCACCACATGTTTGGACATGGATAACAACAACAACAAAGCTGGTTCTGATGATCAGAGAGTGTTTTCTTGCAACTACTGCCACAGGAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCATAAAAGAGAAAGATCAATTGCAAAGAGAAGTCATCATCACAAGCTATTTGGAATCCCTTTTCTTCATCATCACCACAGATATGCTAGTATTGCATCTTTACCTCTCTATGGTGCTGCTTCTTCTAGTAATAAGCCACTTGCAATTCAAGCTCACTCCATGATTCACAAACATCACATATCATCAAATGGGTTTGCAAGTTCTAATAATAATAATATTAATTGGTCAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAAGTGATGGCCAAGAACATGCTCAATTCTGCATCAGATAATAATAAGCACCTTGATTTATCTCTTAAGCTCTAG 684 0.3947 MDTFLRMLSATGEACDDTSNNKQQPLLLQSSSQEHQKEHHHQKEQQVDTTLLDLNLNVPHDDDCSTELSLITTCLDMDNNNNKAGSDDQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRSHHHKLFGIPFLHHHHRYASIASLPLYGAASSSNKPLAIQAHSMIHKHHISSNGFASSNNNNINWSRPPPLIGSSSVGRFQVMAKNMLNSASDNNKHLDLSLKL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121021g00002 227 Coils Coil 211 227 - -
Stsc121021g00002 227 Gene3D Classic Zinc Finger 73 130 - -
Stsc121021g00002 227 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Stsc121021g00002 227 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Stsc121021g00002 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Stsc121021g00002 227 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 216 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121021g00002 Stsc-Chr121021 21326 22009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121021g00002 36 227 C2H2 Transcription Factor Family AT5G10970 36.214 4.11e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121021g00002 - - aip:107621568 232.261