Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121020g00009 ATGGAGAAATACGAGGCTGTGAAGGATTTGGGAGCTGGGAATTTCGGTGTTGCCAGGCTCATGAGGAACAAGATCACCAAGGAGCTCGTCGCCATGAAATACATCGAGCGTGGCCGCAAGATTGATGAGAACGTGGCTAGAGAGATTATCAACCACAGGTCCCTTAGGCATCCCAATATAATTCGTTTCAAGGAGGTGGTGTTGACTCCCACGCATTTAGCGATAGTAATGGAGTATGCTGCCGGAGGAGAACTTTTCGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATATCCGGTGTCCATTTCTGTCATAATATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCAGCACCTCGCCTAAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCATTCGCGACCCAAATCAACTGTTGGAACACCAGCTTATATTGCACCAGAGGTTCTTTCTAGGCGAGAGTATGATGGCAAGATGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGTTGGTTGGAGCCTATCCCTTCGAGGACCAGGATGATCCTAGGAATTTCAGGAAAACAATCCAGCGTATAATGAGTGTTCAATACAAAATCCCGGATTATGTTCACATATCGCAGGATTGTAGACAACTGCTTGCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACACTAAAGGAAATTAAGAACCACCCATGGTTTCTAAAAAATCTTCCAAGAGAGCTAACTGAACCGGCACAAGCTATCTATTACCAGAGAGACAATCCAAGCTTTCATGTTCAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGATGCGAGAAACCCACCGCCAGTATCTAGGCCGGTCAAAGGTTTTGGCTGGGAAGGGGAAGACGATGAAGGCGCAGAAGAAGAAGAAGAGGTGGAAGAAGAAGTAGAGGAAGTAGTTGAGGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCAAATTAGTTAA 1077 0.4438 MEKYEAVKDLGAGNFGVARLMRNKITKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHNMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMSVQYKIPDYVHISQDCRQLLARIFVANPLRRITLKEIKNHPWFLKNLPRELTEPAQAIYYQRDNPSFHVQSVEEIMKIVGDARNPPPVSRPVKGFGWEGEDDEGAEEEEEVEEEVEEVVEEEDEYDKRVKEVHASGEFQIS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121020g00009 358 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Stsc121020g00009 358 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc121020g00009 358 PANTHER SERINE/THREONINE KINASE 2 307 - -
Stsc121020g00009 358 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121020g00009 358 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121020g00009 358 MobiDBLite consensus disorder prediction 306 358 - -
Stsc121020g00009 358 Coils Coil 321 345 - -
Stsc121020g00009 358 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121020g00009 358 CDD STKc_SnRK2 3 259 - -
Stsc121020g00009 358 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Stsc121020g00009 358 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Stsc121020g00009 358 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Stsc121020g00009 358 MobiDBLite consensus disorder prediction 317 339 - -
Stsc121020g00009 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Stsc121020g00009 358 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121020g00009 Stsc-Chr121020 41293 44571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121020g00009 3 281 CBL-interacting serine-threonine protein kinases AT4G24400 41.667 7.67e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc121020g00009 Pkinase 8.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121020g00009 K14498 - gmx:547811 636.721