Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121018g00004 ATGATGTCAACAACAACAACAACTTCACAAACTATGGTTATTAATAACCAACAAAGCTTGTTTGGGGATCAAGATGATCATCATCAGAATATGGAAGCTTCAGAAATGGGGTTTCTTCCTCTTCTACCAACCACCATGATCTTCCCTACTTCTCCTCCTTTGGGATGCAATAATCATCATCCTCAACAACAACAACAACCCTTCTACTCCTTATTGAAACCCTTCTCTTCAATACTATCTCCAAATTCAATTGCATCTGATCAAGCTGATTCAACTTCAAACCTAACCGCTGAAACCCTACTCGCAACTACTGATGCACACCAAAAATCAACATTAGACCTCACTTCTACACCTTTTCTTGGACCTCAATTCCTCTCTTTGAACAGATCCACCGCTATCAACAATAATCCATGGGCAACGGGAGAAGTGCCTGATTGTTTCAGCAGTAAAAGAAATGTTATAGATAATCATCATTATCATCATCATAATCATCATGTGGGGGTTTCTACCATTAAGATGAAGAAAATGAAGGGAAGAAGAAAGGTTAGAGAACCTAGGTTTTGCTTCAAGACTCTCAGCGACGTCGATGTTTTGGACGATGGCTACAAATGGAGGAAGTATGGCCAAAAAGTCGTCAAGAACACGCAACACCCCAGAAGCTACTACCGTTGCACACAAGACAATTGTCGAGTAAAGAAACGAGTGGAGAGGTTAGCTGAGGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCACATTCCATCCAATGATCTTGAAGACTCTCAATCTCCATCTCAACTTACCAACTTCTTCTGGTAG 828 0.4058 MMSTTTTTSQTMVINNQQSLFGDQDDHHQNMEASEMGFLPLLPTTMIFPTSPPLGCNNHHPQQQQQPFYSLLKPFSSILSPNSIASDQADSTSNLTAETLLATTDAHQKSTLDLTSTPFLGPQFLSLNRSTAINNNPWATGEVPDCFSSKRNVIDNHHYHHHNHHVGVSTIKMKKMKGRRKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHIPSNDLEDSQSPSQLTNFFW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121018g00004 275 ProSiteProfiles WRKY domain profile. 193 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121018g00004 275 SMART WRKY_cls 198 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121018g00004 275 FunFam WRKY transcription factor 57 184 258 - -
Stsc121018g00004 275 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121018g00004 275 Gene3D WRKY domain 185 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc121018g00004 275 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 259 IPR044810 GO:0003700
Stsc121018g00004 275 SUPERFAMILY WRKY DNA-binding domain 191 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121018g00004 Stsc-Chr121018 34708 37477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121018g00004 168 275 WRKY Transcription Factor Family AT4G39410 81.416 5.29e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc121018g00004 WRKY 8.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121018g00004 - - adu:107480316 420.624