Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121017g00008 ATGTCTGGATGCAATAAATCTCCAAAAAGTGATAAATATTCTATCAAATATAAGCAGAATCAACATGGGGGAAGTCTTTCTCGTGTGAATCATAAGCCTTCTGTTTCCAATAGTGAGAATAAGCAGTACTACACAAGTTCTGAGCCAAAGCCGAAGCACCCTCAGATACTGAGCCCCGCTCAGCTCATCTCTGCAGTGGGACAGATATGGGATTCTGCAAGACGCCCGCCGTCAGTTTTGCTTCGCGAGGAAAATGTGAGTCGAGATGATAAAGGATTCCCCATAAAAAATATTCCTGATGGCATTCATGTGGAAAGGGGTGGAGGGGTATGTAGTTCAACTAACACTAATTACTTTCATGTTAATGTGGGGGCTGCGGCATACGGTTCACAGATCGTACAGGAAAAGTTAGATTTCCCGACAGTAACACAGAAGGCATTGATTCTTCAATCTAGTAATGGAAGTGAAGAGCGTATTCATTCTTTGTTCCAGAGATTTTTGCAGCCCACTAAGAACAGTTTAAATGAATATTGGAAAGAAACAGAACTTGGGAGTGAGAAAATCTCATTTCAATTGCGAAATGTCTATTGGTGGATGAGTAGGAATGCACCTGAAGGACTTAAGTACCATGTGAAGGCTACAGATCTTGAGAACAAGAAAGATAATTCTCCAGTGGATGGGGACTGCATTTCAACAGATACAAGCACCTTGGCAGTGACTAACGAGAGTGATGTTTTCAATCCGGATTTAATTTTAGATGAAGATCTACCATTATCCAGTGATGCAACAATGGACACAGAAAATATTAGCACTCTGTGTTCGGATTATTTTCTTCCGGTTTTGCCTGACACTAATACTGATGTTGGTGCTGGCCAGATCTCGTCTGCTAGTATCTATGCAGATTGTCATATTAAATCTTTAGATACCTGTGATAGTGCTTCTGTGCAGTGCCAGAATAAGATTGACACTAATGAATTGCTGGAAATTCAAAGAAGACCTTTTACGGATATAACTGATCGGGAAGCTAAGGTTCAGAGCTTTGCAGCAACCCCTCAGAAGCCTTGTTATTCTGTTGCAAAGCAAGAGCATGCTTTTTCTGGTGCAATGGCTGGCGTATGTGTTAGCCTTTGTCTACATCCAGTTGACACTATTAAGACAGTTATTCAGTCATGCTGTGCAGAACAGAGGTCCATTGTTAACATTTGCAAATCGATTGTTTCTGATAGAGGATTGCTCGGACTATATCGTGGAATTACTACAAACATTGCTTGTTCTGCTCCAATTTCTGCAGTTTATACTTTCACATATGAATCTGTTAAAGCAGCTTTGCTTCCTTATCTTACAAAGGAGTATTATTCTTTTGCCCATTGTGTCGGTGGTGCTTCTGCAAGTATTGCCACCTCTTTTATATTCACTCCTAGTGAACGAATTAAGCAGCAGATGCAAGTTGGGTCTCATTACCGCAGCTGTTGGGATGCTTTGGTTGGAATTATCAGAAGTGGTGGTTTTCCATCCCTTTATGCAGGTTGGGGAGCTGTACTGTGCCGAAATGTTCCACATTCGATTATCAAGTTTTATACATATGAAAGCTTGAAGAAAGCGATGCCATCGTTGCCATCTAGTATTCAACCTAATGCATTTCAGACTTTAGTCTGCGGAGGAATAGCTGGATCCACTGCTGCTTTGTTCACCACTCCTTTTGATGTGATCAAGACAAGATTACAGACACAGCTCCCTGGCTCTATGAATCAATATGACAATGTGTTCCAAGGCCTTTACAAAATTAGCAAGAGTGAAGGTTTGAAGGGACTGTACAGGGGATTGACTCCGCGGTTGATCATGTACATGTCTCAAGGATCACTGTTTTTTGCGTCCTATGAATTTTTTAAGAAAGTGCTTTCTTTGGAAGCATCCCACTCCACTGGTTCACTTCTTCCATAG 1941 0.4132 MSGCNKSPKSDKYSIKYKQNQHGGSLSRVNHKPSVSNSENKQYYTSSEPKPKHPQILSPAQLISAVGQIWDSARRPPSVLLREENVSRDDKGFPIKNIPDGIHVERGGGVCSSTNTNYFHVNVGAAAYGSQIVQEKLDFPTVTQKALILQSSNGSEERIHSLFQRFLQPTKNSLNEYWKETELGSEKISFQLRNVYWWMSRNAPEGLKYHVKATDLENKKDNSPVDGDCISTDTSTLAVTNESDVFNPDLILDEDLPLSSDATMDTENISTLCSDYFLPVLPDTNTDVGAGQISSASIYADCHIKSLDTCDSASVQCQNKIDTNELLEIQRRPFTDITDREAKVQSFAATPQKPCYSVAKQEHAFSGAMAGVCVSLCLHPVDTIKTVIQSCCAEQRSIVNICKSIVSDRGLLGLYRGITTNIACSAPISAVYTFTYESVKAALLPYLTKEYYSFAHCVGGASASIATSFIFTPSERIKQQMQVGSHYRSCWDALVGIIRSGGFPSLYAGWGAVLCRNVPHSIIKFYTYESLKKAMPSLPSSIQPNAFQTLVCGGIAGSTAALFTTPFDVIKTRLQTQLPGSMNQYDNVFQGLYKISKSEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKKVLSLEASHSTGSLLP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121017g00008 646 Pfam Mitochondrial carrier protein 452 535 IPR018108 -
Stsc121017g00008 646 Pfam Mitochondrial carrier protein 362 443 IPR018108 -
Stsc121017g00008 646 Pfam Mitochondrial carrier protein 545 634 IPR018108 -
Stsc121017g00008 646 MobiDBLite consensus disorder prediction 17 52 - -
Stsc121017g00008 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 451 534 IPR018108 -
Stsc121017g00008 646 MobiDBLite consensus disorder prediction 1 55 - -
Stsc121017g00008 646 FunFam Mitochondrial substrate carrier protein-like 484 645 - -
Stsc121017g00008 646 Gene3D Mitochondrial carrier domain 451 645 IPR023395 -
Stsc121017g00008 646 Gene3D Mitochondrial carrier domain 339 450 IPR023395 -
Stsc121017g00008 646 SUPERFAMILY Mitochondrial carrier 362 629 IPR023395 -
Stsc121017g00008 646 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 327 637 - -
Stsc121017g00008 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 544 632 IPR018108 -
Stsc121017g00008 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 358 442 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121017g00008 Stsc-Chr121017 35818 39393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121017g00008 458 633 Chloroplast and Mitochondria Gene Families AT1G07030 26.230 5.01e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121017g00008 - - gmx:100812271 804.283