Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121016g00009 ATGAACGCTGCTGGAGCCACCGCTTCTTCCTCTCCAACTCCAAACAACGCTGCTGATGAAGGTGTGAATGTGAATAATACTAAAAAGGATGGAGATGATGAATTGTATGAGAGAGTGTGGCGAGCATGCGCGGGGGAATGTGTGTATATTCCTCGCGGCGGAGACAAGGTGCTCTACTTCCCTCAGGGCTACTTGGAACAGGTGGCTGCATTCACTCAGCATCAGCAAGATGGTCATCACATGGATATTCCTGTGCATAATCTACCTTCTAAGATCCTGTGCCGGGTTGTGTCTGTTCAGTTAAAGGCTGAAGCTTCCACAGACGAGGTTTTTGCTCAAGTTACTCTACTTCCAGAGCCTAAACAAGATGAACTAAGTTTGGAGGATACAGACACAGCTCCAATACCCAGAAAATCCTCTGTATACTCCTTTAGCAAGATACTCACTTCATCAGACTCTAGTGCTCATGGCGGATTCTCTATTCCCAAGAGGCGTGCTTATGAATGCTTCCCCCCTCTGGACATGTCTCTTAAACCCCCAGCACAAGAGATTGTTGCAAGGGACTTGCATGGGTTTGACTGGCACTTCAGGCATATATTTCGTGGTCAGCCAAGACGACACTTACTTACTAGCGGTTGGAGCACATTTTTAAACTCCAAGAAACTTGCTTCTGGAGATACATGCATATTCCTCAGGGGAGAAAATGGAGAACTTCGAATCGGGGTTCGTCGAGCTATGAAAAAGAAAAACATTATTGCATCCCCATCTTCTTCTCTGATATCATCTCATAGCATGCAACTAGGAATTCTGGCTAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCACTGTATACTACCACCCTTGGACGAATCCCTTTGAATTTATCGTTCCTTTGCAACGCTACATGAAGTCAACTGAATTGAGCTATGCAATTGGTATGAGAGTACAAATGCTGCTTGATGTTGAAGAACCTAGAAAAAGATATGAAGGTACTGTAATCAGTATTGAAGATTTTGATGGCATTAGGTGGCGTGGTTCAGAATGGAGAAGCCTCAAGGTTCAATGGGATGCAACACCGGATGCAGATATGGCTCTAGAAAGAGTTTGTCCATGGTGGATTGAGGCTTTGGACTGTGCCAAGCAGAAACACATTCCAATTCTCCCCACACCAAAGAAAGCGCGACCGAATAGCCTGCCGTCACCTGGATTAAGTGGCTTTGTCAAGGATGAGATTATTCGGTATTCAGCTAAGCCTGCATCTGAAAGAGTGGAAAGGAGGGACTTACAAGGTCAAGACTACAATGATGTAGCTTCTCCTCCACAGCCTGTGCTAAAACTAAAACAACCATCATCAAAGGCTATTTGTAACTCAAACTTTGGGATGGAGAATGAGCTTAAATTTCCGATTCAAGACCCTCTTCAGCAGTGTACTGGAAGCTCATTGTCTTTTCCACTTGAAGACTTGTCAGCTTCCGGTTCGAATGCAAACTGCACGGGCTCTGAATCCCAAGGATGGCCTTGTTCTGACTCTAAAGATGAAAATGATGTTCCTTTTGGCCCACATAGCAGTTGTACTACATACAAGCTTTTTGGGATTAACTTAACTGATAGCCAATCGGAGCTCCCTTCACAACAATTTTCTGCTTACAGCAAGTTTCCAAGTACCATTTCTATTCCTCCAATGTCTCACTCAAGTATTCATGCAACAATCCAGGCAGAGGCAGCAAAAGCCTACGGAAATATTCAAGGTGTGCACTTGTTTACTGTTTCTGCAATATGGGTTCTTAAGCAAGGAACTGCCCTTGGAAGAGCAATTGATCTCACTCGTTTTGCTGGATATGACGAACTCGTTTCTGAACTTGACTGGATGTTTGATTTTGGTGGAGGCTTAATTAATGGAAGCAGTGGATGGCATGTTACCTGCATAGATGAAGATGGAGATATCATGCTCCTGGGCGATTTCCCATGGCAGGACTTCCAATCCATGGTGCAAAAGATGATAATATGTCCAAAGGATGGAATTGACAATTCTAGTCCAAGCTCGTCTGCATACCCTGCAAGCATTTAA 2073 0.4443 MNAAGATASSSPTPNNAADEGVNVNNTKKDGDDELYERVWRACAGECVYIPRGGDKVLYFPQGYLEQVAAFTQHQQDGHHMDIPVHNLPSKILCRVVSVQLKAEASTDEVFAQVTLLPEPKQDELSLEDTDTAPIPRKSSVYSFSKILTSSDSSAHGGFSIPKRRAYECFPPLDMSLKPPAQEIVARDLHGFDWHFRHIFRGQPRRHLLTSGWSTFLNSKKLASGDTCIFLRGENGELRIGVRRAMKKKNIIASPSSSLISSHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIVPLQRYMKSTELSYAIGMRVQMLLDVEEPRKRYEGTVISIEDFDGIRWRGSEWRSLKVQWDATPDADMALERVCPWWIEALDCAKQKHIPILPTPKKARPNSLPSPGLSGFVKDEIIRYSAKPASERVERRDLQGQDYNDVASPPQPVLKLKQPSSKAICNSNFGMENELKFPIQDPLQQCTGSSLSFPLEDLSASGSNANCTGSESQGWPCSDSKDENDVPFGPHSSCTTYKLFGINLTDSQSELPSQQFSAYSKFPSTISIPPMSHSSIHATIQAEAAKAYGNIQGVHLFTVSAIWVLKQGTALGRAIDLTRFAGYDELVSELDWMFDFGGGLINGSSGWHVTCIDEDGDIMLLGDFPWQDFQSMVQKMIICPKDGIDNSSPSSSAYPASI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121016g00009 690 Gene3D - 310 384 - -
Stsc121016g00009 690 SUPERFAMILY DNA-binding pseudobarrel domain 135 275 IPR015300 -
Stsc121016g00009 690 FunFam Auxin response factor 142 246 - -
Stsc121016g00009 690 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677
Stsc121016g00009 690 Pfam Auxin response factor 273 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc121016g00009 690 SMART B3_2 144 246 IPR003340 GO:0003677
Stsc121016g00009 690 SUPERFAMILY CAD & PB1 domains 598 667 - -
Stsc121016g00009 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc121016g00009 690 Pfam AUX/IAA family 632 670 IPR033389 -
Stsc121016g00009 690 CDD B3_DNA 143 244 IPR003340 GO:0003677
Stsc121016g00009 690 ProSiteProfiles PB1 domain profile. 591 674 IPR000270 GO:0005515
Stsc121016g00009 690 Pfam B3 DNA binding domain 144 245 IPR003340 GO:0003677
Stsc121016g00009 690 Gene3D - 141 246 IPR015300 -
Stsc121016g00009 690 MobiDBLite consensus disorder prediction 1 23 - -
Stsc121016g00009 690 Gene3D - 590 679 - -
Stsc121016g00009 690 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121016g00009 Stsc-Chr121016 39063 46967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121016g00009 592 683 B3 DNA Binding Superfamily AT5G62000 44.565 5.29e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc121016g00009 B3 7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121016g00009 - - lja:Lj1g3v4764520.2 774.237