Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121016g00003 ATGACTGCCCCTCATCCAAATTCAACAAACTCTGCATCACACAGACAACAAGATAAACCCTCACCATCACCATGCGACTACTGCAACAGCTCCAGCTCAGTTCTCTACTGCAGAGCAGATTCAGCGAAGCTTTGTTTCACATGCGACCGCGAGGTTCATTCAACAAACCAGCTCTTCTCCAAGCACACACGCACTCTTCTCTGCGATTCTTGCTACGATTCCCCTGCTTCCATACTCTGTTCAACAGAATCCTCTGTTCTCTGCCATAACTGTGACTGGGAAAGTCACAACCTTTCTCTCCCAATTGTACACGAGAGGGGTCCCCTTGAAGGATTCACCGCTTGCCCTTCCGTTTCTGAGCTTTTAACCATTCTGGGCTTTGAAGATATTGGGAAAAAGGCTCTGCTTTATGGTGGTGGTGGTGGTGGAGAAGGGGAAAAGGATTCTGCTGCTGTTGACTTTATGGCCTCTGAGATTGAAGGCTTTTCGGATTTCTTCGTTTGGGATGCTCCTTCTGTTGTTAGCCTCGATGATTTGATTTCTTCTTCTGCTCCTTCTCATAACTTTCATGCTATGGAGGTTCCTCCACTCCCCAAGAATCGCAAAGCTGCTTGTGGGAGACATAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTCGCAAAGTCTGAGCCCTTAGACTTAGACAATGAACAACAACAGTACCTGCAATCAGGGAACATGTCCACGGATCCTGAACATGATTTCAAGACTGATATATTCCCTTCTTATGAGTGGCATAGAGGAAGCAGTGAACCTATGAATCAAGTTGTTCCTCTGAATACATTGTTGGGTGAAGAAGCTGCAGTTGAACATCCAACTTCTGCTGTTCCAGAGAAAACTGAGGAGAAACCATCAGTGTCTCTCAAATCTGATACCGTATCAGCTGTTCCAAAAGCTGCTCCATGTGAGTTAACGAGTCAAGAAAGAGATTCTGCATTGTTACGGTACAAGCAAAAGAAAAAAACCAGAAGATATGAGAAGCACATAAGATATGAATCACGAAAAGTTCGGGCACAAAGCAGGATAAGAGTGAAGGGCCGATTTGCTAAGATTGAACACTGA 1101 0.4505 MTAPHPNSTNSASHRQQDKPSPSPCDYCNSSSSVLYCRADSAKLCFTCDREVHSTNQLFSKHTRTLLCDSCYDSPASILCSTESSVLCHNCDWESHNLSLPIVHERGPLEGFTACPSVSELLTILGFEDIGKKALLYGGGGGGEGEKDSAAVDFMASEIEGFSDFFVWDAPSVVSLDDLISSSAPSHNFHAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLDNEQQQYLQSGNMSTDPEHDFKTDIFPSYEWHRGSSEPMNQVVPLNTLLGEEAAVEHPTSAVPEKTEEKPSVSLKSDTVSAVPKAAPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAQSRIRVKGRFAKIEH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121016g00003 366 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Stsc121016g00003 366 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Stsc121016g00003 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 363 - -
Stsc121016g00003 366 Pfam CCT motif 322 363 IPR010402 GO:0005515
Stsc121016g00003 366 MobiDBLite consensus disorder prediction 1 23 - -
Stsc121016g00003 366 ProSiteProfiles Zinc finger B-box type profile. 63 109 IPR000315 GO:0008270
Stsc121016g00003 366 SMART bboxneu5 20 67 IPR000315 GO:0008270
Stsc121016g00003 366 SMART bboxneu5 68 109 IPR000315 GO:0008270
Stsc121016g00003 366 CDD Bbox1_BBX-like 24 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121016g00003 Stsc-Chr121016 11546 13737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121016g00003 25 337 C2C2-CO-like Transcription Factor Family AT2G47890 39.275 2.95e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc121016g00003 CCT 1.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121016g00003 - - gmx:100777428 468.388