Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121016g00002 ATGGCAGACTTGTCTTCCGCATCAACTCCTCCAACTCCACCTGAATCTCAAACTAGACTACACTTGGGGAAATTGCAGCACGGATGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGGTTCACTAAGCGATCCCAAGGATCGTCATGAACTTATCAGAAGCGATGTCAAGCAAGTTATATGTTCCATCTGTCATACTGAGCAAGAGGCTGCCAAGGTCTGTGCAAACTGTGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTCTACGATGATGATATAGAGAAAGGACAGTTCCATTGTGACGAATGCGGGATTTGCAGGGTTGGTGGTCGTGACAATTTCTTCCACTGTCCGAAGTGCGCCTCTTGCTATTCGGTGAGCTTGCAAGGAAACCACTTCTGTGTGGAGAACTCGATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGCACCACAATTATGGATTGTGGACACACAATGCATATGGATTGCTTTCGTGAAATGGTAGAGCAAAATCAGTATCGCTGTCCTATCTGCTCAAAGACAATTTTTGATATGTCTCGGAGCTGGGAACATTTAGATCAGGAGATTCAAGCTGTTCCCATGCCCGAGGAATATAATTTTGAGGTTTCTATTCTGTGCAATGATTGTAACAAAACAAGCAGAGTTTCCTTTCACATATTTGGTCACAAGTGCAGAGAGTGCGGTTCCTATAACACCCGCAAAGTTTCAGCACCTGAAAGCCAGTAA 831 0.4428 MADLSSASTPPTPPESQTRLHLGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMGSLSDPKDRHELIRSDVKQVICSICHTEQEAAKVCANCGVNMGEYYCEICKFYDDDIEKGQFHCDECGICRVGGRDNFFHCPKCASCYSVSLQGNHFCVENSMKSFCPVCYEYLFDSIKGTTIMDCGHTMHMDCFREMVEQNQYRCPICSKTIFDMSRSWEHLDQEIQAVPMPEEYNFEVSILCNDCNKTSRVSFHIFGHKCRECGSYNTRKVSAPESQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121016g00002 276 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 274 - -
Stsc121016g00002 276 Pfam Ring finger domain 164 206 IPR001841 -
Stsc121016g00002 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 234 IPR013083 -
Stsc121016g00002 276 Pfam CHY zinc finger 29 109 IPR008913 GO:0008270
Stsc121016g00002 276 Gene3D - 235 274 - -
Stsc121016g00002 276 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Stsc121016g00002 276 ProSiteProfiles Zinc finger CHY-type profile. 22 97 IPR008913 GO:0008270
Stsc121016g00002 276 SUPERFAMILY RING/U-box 163 213 - -
Stsc121016g00002 276 SUPERFAMILY CHY zinc finger-like 26 98 IPR037274 GO:0008270
Stsc121016g00002 276 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Stsc121016g00002 276 SMART ring_2 164 206 IPR001841 -
Stsc121016g00002 276 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Stsc121016g00002 276 Pfam Zinc-ribbon 211 268 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121016g00002 Stsc-Chr121016 5578 9743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121016g00002 27 272 C2H2 Transcription Factor Family AT3G18290 41.897 6.02e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121016g00002 K10144 - qsa:O6P43_007118 475.322