Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121014g00011 ATGACGCAGCAGCAGAATGTGGTTGTGGCCGCGGAGGACATTAAGAGGGCCCAAAAGCCACCGGCCATACCGGGAGGGTACATTCCCATCCCAAGGAGGAGTGTGCTGAAGAGCCTTGAAATCAACGGTCCTGAAAGGATCAATGCTTGGCTTGACTCTATGAGAGCCTCCTCTCCTACTCATCCCAAATCATCATCCACTCCTTCTCAGATATCTCAAGACCACTCCTCTTGGATTCTTAACCACCCCTCCGCACTAGACATGTTTGACCAAATCATGGATGCATCAAAAGGAAAGAAAATCGTCATGTTCCTCGACTATGATGGCACTTTGTCACCCATAGTCGACGACCCCGACCGCGCTTTCATGTCCGATTCGATGAGGAAGACTGTGAGGAAGCTTGCAAGGTGTTTTCCTACTGCCATAGTTACAGGCAGATGCAGAGACAAGGTATATAACTTTGTTCGCTTGGCGGAGCTATACTATGCTGGTAGTCATGGCATGGATATAAAAGGCCCAACAAGAACCTCCAAATATAACAAAGACACAAAGGCAGACCCTGTTCTTTTTCAACCTGCCGCTCAATTTCTTCCTCTCATAGATGAGGTGTACCAACAGTTGGTTGAGAAAACGAAATCAACTCCCGGTGCCAGGGTGGAGAACAACAAGTTCTGTGTCTCTGTCCATTTTCGATGTGTTGAGGAGAAGGAATGGAGTGAACTGGCACAACAAGTGAGATCAGTGTTAAAGAAGTACCCGAAGCTTCGTCTTAGCCAAGGGAGGAAGGTATTGGAGATTCGTCCTACTATTAAATGGGACAAAGGCAAGGCCCTTGAATTTTTGTTAGAGTCTCTCGGATTTGCCAACTGTAGTGATGTCTTTCCCGTTTACATTGGGGATGATAGAACCGATGAAGATGCATTCAAGAAGTTGAGAGACAGAGGACAAGGTTTAGGAATTCTTGTCTCGAAATTTCCGAAAGACACTAATGCATCCTACTCTTTGCAAGAACCTACTGAGGTTATGGACTTTCTTCAACGTTTAGTGGATTGGAAGAAAGAATCCCTGCGAGCACGTTCCAGGGTGTAA 1089 0.4637 MTQQQNVVVAAEDIKRAQKPPAIPGGYIPIPRRSVLKSLEINGPERINAWLDSMRASSPTHPKSSSTPSQISQDHSSWILNHPSALDMFDQIMDASKGKKIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNKDTKADPVLFQPAAQFLPLIDEVYQQLVEKTKSTPGARVENNKFCVSVHFRCVEEKEWSELAQQVRSVLKKYPKLRLSQGRKVLEIRPTIKWDKGKALEFLLESLGFANCSDVFPVYIGDDRTDEDAFKKLRDRGQGLGILVSKFPKDTNASYSLQEPTEVMDFLQRLVDWKKESLRARSRV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121014g00011 362 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 357 IPR044651 GO:0004805|GO:0005992
Stsc121014g00011 362 Pfam Trehalose-phosphatase 104 338 IPR003337 GO:0003824|GO:0005992
Stsc121014g00011 362 SUPERFAMILY HAD-like 102 351 IPR036412 -
Stsc121014g00011 362 MobiDBLite consensus disorder prediction 55 74 - -
Stsc121014g00011 362 NCBIfam trehalose-phosphatase 98 349 IPR003337 GO:0003824|GO:0005992
Stsc121014g00011 362 CDD HAD_TPP 102 342 - -
Stsc121014g00011 362 FunFam Trehalose 6-phosphate phosphatase 101 188 - -
Stsc121014g00011 362 Gene3D - 101 188 IPR023214 -
Stsc121014g00011 362 Gene3D - 199 361 IPR023214 -
Stsc121014g00011 362 FunFam Trehalose 6-phosphate phosphatase 199 358 - -
Stsc121014g00011 362 NCBIfam HAD-IIB family hydrolase 103 314 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121014g00011 Stsc-Chr121014 52977 55644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121014g00011 97 350 Trehalose Biosynthesis Gene Families AT1G60140 24.632 3.85e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121014g00011 K01087 - gmx:100794430 600.127