Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121014g00008 ATGTCAAAGGGTCCAAAGTTTGAAGTTGATGATTGTACCAAGTTCTTTGGAGCCATAAGCAATGCAAACTTGTTGGTGACTCGGGCACAAGTTGATTTGGTTGCTGGCAGATTTGAAGATGCATTAGAAGCAGTTGAAGAAGCAAGTAGGCTAGACTCAAATAACAGGGAGGTAAGGAAAGTGATGATGAAGGTGAAAGGCGTGGCAGCTGCAAGATCAAATGGCAACAACCTTTTCAAGGCATCGATATTCTCCGAGGCTTGTGCTGCCTATGAAGAAGGTCTTGCCCATGATCCTTATAACTCGGTTTTGCTATGCAATCGAGCTGCTTGTAGATCAAACTTAGGTGAATTCCAGAGAGCCGTGGAAGATTGTACAGCTGCGCTTAGCTTTCGCCCATCTTACACCAAGGCCAGGTTGAGAAGAGCCCATTGCAATGCAAAGTTGAAAAAATTGGAAGATGCAATACAAGACTTTGAAATTTTGGTAAAAGAGACACCGGAAGATGAAGAAGTAAGTAGGGCTTTGTTGGAAGCCAAAGAGCAACTCAGTAAGAAACAAGTAGCCAGGTGA 573 0.4363 MSKGPKFEVDDCTKFFGAISNANLLVTRAQVDLVAGRFEDALEAVEEASRLDSNNREVRKVMMKVKGVAAARSNGNNLFKASIFSEACAAYEEGLAHDPYNSVLLCNRAACRSNLGEFQRAVEDCTAALSFRPSYTKARLRRAHCNAKLKKLEDAIQDFEILVKETPEDEEVSRALLEAKEQLSKKQVAR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121014g00008 190 Gene3D Tetratricopeptide repeat domain 18 188 IPR011990 GO:0005515
Stsc121014g00008 190 ProSiteProfiles TPR repeat profile. 22 55 IPR019734 GO:0005515
Stsc121014g00008 190 SUPERFAMILY TPR-like 74 187 IPR011990 GO:0005515
Stsc121014g00008 190 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 187 IPR044534 -
Stsc121014g00008 190 Pfam Tetratricopeptide repeat 90 123 - -
Stsc121014g00008 190 Coils Coil 142 162 - -
Stsc121014g00008 190 SMART tpr_5 102 135 IPR019734 GO:0005515
Stsc121014g00008 190 SMART tpr_5 136 169 IPR019734 GO:0005515
Stsc121014g00008 190 SMART tpr_5 22 55 IPR019734 GO:0005515
Stsc121014g00008 190 SMART tpr_5 68 101 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121014g00008 Stsc-Chr121014 39679 40533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121014g00008 45 185 Calmodulin-binding Proteins AT5G48570 25.000 1.62e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121014g00008 - - qsa:O6P43_030454 277.715