Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121014g00007 ATGGGAGACACATCGCCGCCGAAATACGGTTGCTGCTTAGTATTCTGGAGACGCGGAACAACCTCCCACACTTCTACTCCCAATACCAATATCAACGACAACAATTTTGTGAAGGAACCATTACCAAAAAACATGAAAACACATGCACCTGGACCCCAAGATACGTCTTCCCTCAGAACAATTGCATCCAAGCCGACTCTAGTAGGAGGCACATCAAGAGTTACACCTGCTGAGGGCTATGTCAATCAAGGAAGGATGGTACCCCAAGAAGCTGTTGGCATTTCCGGCGAGCTCGAAAGAATGTTCATGGATCACCACAAGTCCAATGGAAACAGTACGCTTGTTAGAGCTTCATCTAGCAATGTGATGCTGGCTGGTCATTTAGGTAACTTGAGGCAACAGAGTACCAATTCAAACACTAGTGGTGTGGATTACCAGGGCAAACATGTTAGGCAAGAAATCCCGGACCAGGTTGCTTATAATGGAAGAAACACAAATCCTAAGGTGCAAAACGTGGCCAGAATAAAAAAGGAAGACTCTGCTTCTTTATGCAGGGCAATATCTACTAGAATGGATCCAGAGAAGTTGAAGATAATGGGAAATGAAGATTACAAGAATGGGAGGTTTGAAGAGGCTTTAGCTTTGTATGATGCCGCGATTGCGCTTGATCCCAATAAGGCCTCGTATAGGAGCAACAGAAGTGCAGCGTTAAGTGCACTTGGTAGGCTTTTGGAAGCTGTGTTTGAGTGTAGAGAAGCCATCCAAATGGAGCCTCATTACCATAGAACTCATCATCGATTGGGAAACTTGTACACAAGATTAGGGGAAACAGATAAGGCCCTTTATCATTATAAACATGCAGGACCTGAGGCTGATCCAGAAGAGATTGCACGAGTCAAGAGTCTTCAGCTCCAGCTAAACTAG 924 0.4491 MGDTSPPKYGCCLVFWRRGTTSHTSTPNTNINDNNFVKEPLPKNMKTHAPGPQDTSSLRTIASKPTLVGGTSRVTPAEGYVNQGRMVPQEAVGISGELERMFMDHHKSNGNSTLVRASSSNVMLAGHLGNLRQQSTNSNTSGVDYQGKHVRQEIPDQVAYNGRNTNPKVQNVARIKKEDSASLCRAISTRMDPEKLKIMGNEDYKNGRFEEALALYDAAIALDPNKASYRSNRSAALSALGRLLEAVFECREAIQMEPHYHRTHHRLGNLYTRLGETDKALYHYKHAGPEADPEEIARVKSLQLQLN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121014g00007 307 Gene3D Tetratricopeptide repeat domain 191 307 IPR011990 GO:0005515
Stsc121014g00007 307 SUPERFAMILY TPR-like 192 287 IPR011990 GO:0005515
Stsc121014g00007 307 ProSiteProfiles TPR repeat profile. 193 226 IPR019734 GO:0005515
Stsc121014g00007 307 Pfam Tetratricopeptide repeat 263 290 IPR019734 GO:0005515
Stsc121014g00007 307 Pfam TPR repeat 200 241 - -
Stsc121014g00007 307 SMART tpr_5 227 260 IPR019734 GO:0005515
Stsc121014g00007 307 SMART tpr_5 261 295 IPR019734 GO:0005515
Stsc121014g00007 307 SMART tpr_5 193 226 IPR019734 GO:0005515
Stsc121014g00007 307 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 46 307 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121014g00007 Stsc-Chr121014 38404 39415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121014g00007 194 268 U-box Gene Family AT3G07370 36.000 3.82e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121014g00007 - - aip:107633661 468.003