Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121011g00007 ATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCGATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAACTAATATATCATTGTGTTGCTCGTAGGCCATGCCCGAATGATAAATTAATTAAAAATATATGCAGTATGACGTGCTTGGATCCTTCTGAGACCCCTCAAGCTAAACTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCCGTGAGCAAACATAAATCGAAGGTCCATGTTTTGGCTGGTGAAGATAGATCGAAAGTGGAAGGGTTTATAAGCAGACGTGGGTCGGAATTAGCTTTGAGGCATTTGTGTGAGAAGTTTGGAGTGTTATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAACCAAGCTCCTCTGAATCTCCAGCAGTCACTGACGAAAAACAAGTTACTAAGGCTGTTGAGTCTGTTAGTGATGCCCAGACATTGATTAATAATATTCAGGTCGTACGATCTATTTCACCCTTGTTAAATGAGGAGTTGAAGCCAAAATTGTTGACACTTCTCCCGTGCATTTTTAAATGCATTCAGCATCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCTGTAGTTGAAAATGCGATCCCGATGTTAGAAGAAGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGTGAAGAGTTGGTCCCTTACGCTCCATTATTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTAAGACAGAGTGTGACCCATAGTTTTGCTGCCCTTGTGCCTTTACTTCCTTTGGCACGGGGCCTTCCTCAACCAGTTGGATTAGGGGAAGGTGTATCTAGAAATGCTAATGATTTGCAATTTTTGGAGCAACTGCTTGACAATTCCCACATTGAAGATTACATGTTGTGCACTGAATTGAAAGTGACACTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGCAAGACGCTTCAGGCATCGGCTATTGTGGCCTCTGATATCGCCGAGCACCAAACTCAATCTGGGAATGGAGATCTTCTACCATCTTTGATTATTTGCCCGTCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTTATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGACCGAATGATTCTTCGAGATCATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGACGTTGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCCAAAGTTACCCTTGCTGTAAAGCAGTTAAAAGCCCAACACCGCTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCACTTTTAGCTGCTAGAGATCCAAAATGCTCAGCTAAAGATGCTGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTCGAACAAAGGATGAGGTCTTGTCTGATCTGCCGGAAAAAATAATTCAAGACAGATACTGTAATTTGAGCCCTGTACAATATAAACTCTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCGTCTATTGTGACAACAAACGAATCTGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATATCTGCTGAAGCTGTGCAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCAATTTCAACCATTCTCTCAGGAATGTTACCGGGTGTTTCTGACATCATTTCAGAACTTCACAACCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACGTTGGCCAGCACAGGGTCTTAATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGATTTGTTTCAGACTCACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGACCCTACCATTGATGTCTTACTGCTGACAACACATGTGGGTGGCCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCCATGCGAGATCATCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACGATGAATACAGATCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAGGAAGGGATCTTCTGCCGGGAAGAGTTTGGAAAACAACCCCGAAGGAGACGCTAAATTAGTAGGCACTGGGAAGGGGCTGAAAGCCATACTTGGGGGATTGGAAGAGCTATGGGACCAATCACAATACACAGAAGAGTACAATCTAAGTCAATTCTTAGCAAAACTAAATGGTTAA 2874 0.421 MSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPQAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSELALRHLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESPAVTDEKQVTKAVESVSDAQTLINNIQVVRSISPLLNEELKPKLLTLLPCIFKCIQHPHVAVRLAASRCITSMARSMTVKVMSAVVENAIPMLEEASSVHARQGAGMLINFLVQGLGEELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGVSRNANDLQFLEQLLDNSHIEDYMLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHQTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCNLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSISTILSGMLPGVSDIISELHNLHHSPKLVALQEILEECGIGVDASGSEGSVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSRKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121011g00007 957 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 885 IPR001650 -
Stsc121011g00007 957 Pfam HEAT repeat 203 231 IPR000357 GO:0005515
Stsc121011g00007 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 593 IPR027417 -
Stsc121011g00007 957 Gene3D - 5 319 IPR011989 -
Stsc121011g00007 957 SMART ultradead3 357 554 IPR014001 -
Stsc121011g00007 957 FunFam TATA-binding protein-associated factor 172 603 920 - -
Stsc121011g00007 957 Pfam Helicase conserved C-terminal domain 737 839 IPR001650 -
Stsc121011g00007 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 895 IPR027417 -
Stsc121011g00007 957 SUPERFAMILY ARM repeat 10 400 IPR016024 -
Stsc121011g00007 957 CDD SF2_C_SNF 708 850 - -
Stsc121011g00007 957 Pfam Domain of unknown function (DUF3535) 5 144 IPR022707 -
Stsc121011g00007 957 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 373 543 IPR014001 -
Stsc121011g00007 957 CDD DEXHc_Mot1 361 593 IPR044078 GO:0005524
Stsc121011g00007 957 Pfam SNF2-related domain 379 675 IPR000330 GO:0005524|GO:0140658
Stsc121011g00007 957 FunFam B-TFIID TATA-box-binding protein-associated factor 1 331 592 - -
Stsc121011g00007 957 Gene3D - 333 592 IPR038718 -
Stsc121011g00007 957 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 956 IPR044972 GO:0003677|GO:0016887|GO:0017025
Stsc121011g00007 957 Gene3D - 603 915 IPR027417 -
Stsc121011g00007 957 FunFam TATA-binding protein-associated factor BTAF1 108 319 - -
Stsc121011g00007 957 SMART helicmild6 753 839 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121011g00007 Stsc-Chr121011 68712 74761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121011g00007 356 894 RAD5 or RAD16-like Gene Family AT1G02670 26.655 3.88e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc121011g00007 SNF2_N 4.3e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121011g00007 K15192 - gmx:100777977 1689.09