LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121011g00007	ATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCGATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAACTAATATATCATTGTGTTGCTCGTAGGCCATGCCCGAATGATAAATTAATTAAAAATATATGCAGTATGACGTGCTTGGATCCTTCTGAGACCCCTCAAGCTAAACTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCCGTGAGCAAACATAAATCGAAGGTCCATGTTTTGGCTGGTGAAGATAGATCGAAAGTGGAAGGGTTTATAAGCAGACGTGGGTCGGAATTAGCTTTGAGGCATTTGTGTGAGAAGTTTGGAGTGTTATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAACCAAGCTCCTCTGAATCTCCAGCAGTCACTGACGAAAAACAAGTTACTAAGGCTGTTGAGTCTGTTAGTGATGCCCAGACATTGATTAATAATATTCAGGTCGTACGATCTATTTCACCCTTGTTAAATGAGGAGTTGAAGCCAAAATTGTTGACACTTCTCCCGTGCATTTTTAAATGCATTCAGCATCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCTGTAGTTGAAAATGCGATCCCGATGTTAGAAGAAGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGTGAAGAGTTGGTCCCTTACGCTCCATTATTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTAAGACAGAGTGTGACCCATAGTTTTGCTGCCCTTGTGCCTTTACTTCCTTTGGCACGGGGCCTTCCTCAACCAGTTGGATTAGGGGAAGGTGTATCTAGAAATGCTAATGATTTGCAATTTTTGGAGCAACTGCTTGACAATTCCCACATTGAAGATTACATGTTGTGCACTGAATTGAAAGTGACACTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGCAAGACGCTTCAGGCATCGGCTATTGTGGCCTCTGATATCGCCGAGCACCAAACTCAATCTGGGAATGGAGATCTTCTACCATCTTTGATTATTTGCCCGTCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTTATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGACCGAATGATTCTTCGAGATCATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGACGTTGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCCAAAGTTACCCTTGCTGTAAAGCAGTTAAAAGCCCAACACCGCTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCACTTTTAGCTGCTAGAGATCCAAAATGCTCAGCTAAAGATGCTGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTCGAACAAAGGATGAGGTCTTGTCTGATCTGCCGGAAAAAATAATTCAAGACAGATACTGTAATTTGAGCCCTGTACAATATAAACTCTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCGTCTATTGTGACAACAAACGAATCTGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATATCTGCTGAAGCTGTGCAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCAATTTCAACCATTCTCTCAGGAATGTTACCGGGTGTTTCTGACATCATTTCAGAACTTCACAACCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACGTTGGCCAGCACAGGGTCTTAATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGATTTGTTTCAGACTCACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGACCCTACCATTGATGTCTTACTGCTGACAACACATGTGGGTGGCCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCCATGCGAGATCATCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACGATGAATACAGATCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAGGAAGGGATCTTCTGCCGGGAAGAGTTTGGAAAACAACCCCGAAGGAGACGCTAAATTAGTAGGCACTGGGAAGGGGCTGAAAGCCATACTTGGGGGATTGGAAGAGCTATGGGACCAATCACAATACACAGAAGAGTACAATCTAAGTCAATTCTTAGCAAAACTAAATGGTTAA	2874	0.421	MSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPQAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSELALRHLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESPAVTDEKQVTKAVESVSDAQTLINNIQVVRSISPLLNEELKPKLLTLLPCIFKCIQHPHVAVRLAASRCITSMARSMTVKVMSAVVENAIPMLEEASSVHARQGAGMLINFLVQGLGEELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGVSRNANDLQFLEQLLDNSHIEDYMLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHQTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCNLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSISTILSGMLPGVSDIISELHNLHHSPKLVALQEILEECGIGVDASGSEGSVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSRKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG	957

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121011g00007	957	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	729	885	IPR001650	-
	Stsc121011g00007	957	Pfam	HEAT repeat	203	231	IPR000357	GO:0005515
	Stsc121011g00007	957	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	347	593	IPR027417	-
	Stsc121011g00007	957	Gene3D	-	5	319	IPR011989	-
	Stsc121011g00007	957	SMART	ultradead3	357	554	IPR014001	-
	Stsc121011g00007	957	FunFam	TATA-binding protein-associated factor 172	603	920	-	-
	Stsc121011g00007	957	Pfam	Helicase conserved C-terminal domain	737	839	IPR001650	-
	Stsc121011g00007	957	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	594	895	IPR027417	-
	Stsc121011g00007	957	SUPERFAMILY	ARM repeat	10	400	IPR016024	-
	Stsc121011g00007	957	CDD	SF2_C_SNF	708	850	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121011g00007	Stsc-Chr121011	68712	74761	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121011g00007	356	894	RAD5 or RAD16-like Gene Family	AT1G02670	26.655	3.88e-43	166

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Stsc121011g00007		SNF2_N	4.3e-62	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121011g00007	K15192		-	gmx:100777977	1689.09

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