Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121008g00006 ATGGAAACTTGTACGGCACTTCTGCTTTTAACGGCGGTCATTGCATACCAGCTTTGGCTAACGTTCATCTCACGGTCACTGAAGGGTCCACGTGTCTGGCCCCTATTGGGCAGTCTCCCGGGGCTGATTGAGAATTGCGACCGCATGCATGACTGGATCTGTGATAACCTCCGCGCGTGTGGCGGCACGTACCAGACCTGCATCTGTGCAATCCCCTTCCTTGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGCGACCCGAGAAACTTGGAGCACATTCTCAAGACCCGATTCGATAATTACCCTAAAGGTCCTACGTGGCATGCTGTCTTTCATGATCTACTCGGTGACGGGATCTTCAACTCTGACGGTGACACGTGGCTCTTCCAGCGTAAGACAGCTGCATTGGAATTCACCACGCGGACCCTCCGCCAAGCCATGGCTCGCTGGGTGACGCGAGCCATCAAGGATCGGCTTTGCTTGATCCTCAAGAAAGCTGAGGAGCAGGCCGAGTCGGTCGACTTGCAAGATCTAATGCTCCGGCTCACCTTCGACAACATTTGCGGCTTGGCTTTTGGGAGGGACCCACAAACTTGTGGCCTAGGTTTGCCGGAGAACAATTTTGCTTCGGCTTTCGACCGGGCCACCGAAGCCTCGCTTCAGCGGTTCATCTTGCCCGAGGTGTTTTGGAAGGTGAAGAAATGGCTTGGGCTTGGGATGGAAGTGACATTGAGCCGAAGCCTTGTGGACGTGAACAAGCATTTAACTAATGTCATTGAGAAGCGCAAGGTGGAGTTATTAAGCCAGCAAAAGGATGGGACCCACCATGATGATTTGCTGACTAGGTTTATGAGGAAAAAGGAGTCCTACTCGGATGAATTTCTCCAACACGTGGCATTGAATTTCATCCTAGCTGGACGTGACACGTCATCGGTTGCATTGAGTTGGTTTTTCTGGTTGGTAATTCAGAATCCAAATGTGGAAGATAAAATCTTGCGCGAAATATGCTCTGTTCTGATTGAGACACGTGGCGATGACGTGGAAAAGTGGCTTGAGGAACCGTTGGTGTTTGAGGAAATTGATCGTTTGGTTTATCTAAAAGCAGCATTGTCCGAGACACTAAGGTTGTACCCTTCAGTGCCGGAGGATTCTAAGCACGTGGTCGCCGATGATGTGTTGCCGGATGGCACTTTTGTTCCGGCCGGATCATCGGTGACTTATTCGATATACTCAGCAGGGAGGATGCGGTCCACGTGGGGCGAAGACTGCATGGAATTTCGGCCTGAGAGGTGGTTATCTCAGGATGGAACAAAGTTCATTATGCATGATTCTTTCAGGTTTGTTGCCTTCAATGCTGGTCCAAGAATATGCTTAGGAAAAGATTTAGCATACTTACAGATGAAGTCAGTTGCGGCCGCGGTTCTCCTCCGCCACCGCCTCACATTGGTGCCTGGCCACCTGGTGGAGCAGAAGATGTCACTCACATTGTTCATGAAAAATGGACTGAAGGTCAATGTTCATAGCAGGGATTTGAAGGGTTTTTTGGGAAGCTATCTGAAAGAAATAGAAGCAGAGAATAATGGTAAAGAATCTGCAGGTTTGAGAAGCAATGGGTGTTAA 1620 0.4981 METCTALLLLTAVIAYQLWLTFISRSLKGPRVWPLLGSLPGLIENCDRMHDWICDNLRACGGTYQTCICAIPFLAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWHAVFHDLLGDGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVTRAIKDRLCLILKKAEEQAESVDLQDLMLRLTFDNICGLAFGRDPQTCGLGLPENNFASAFDRATEASLQRFILPEVFWKVKKWLGLGMEVTLSRSLVDVNKHLTNVIEKRKVELLSQQKDGTHHDDLLTRFMRKKESYSDEFLQHVALNFILAGRDTSSVALSWFFWLVIQNPNVEDKILREICSVLIETRGDDVEKWLEEPLVFEEIDRLVYLKAALSETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSAGRMRSTWGEDCMEFRPERWLSQDGTKFIMHDSFRFVAFNAGPRICLGKDLAYLQMKSVAAAVLLRHRLTLVPGHLVEQKMSLTLFMKNGLKVNVHSRDLKGFLGSYLKEIEAENNGKESAGLRSNGC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121008g00006 539 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Stsc121008g00006 539 SUPERFAMILY Cytochrome P450 27 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 Gene3D Cytochrome P450 23 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 Pfam Cytochrome P450 28 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 CDD CYP86A 67 502 - -
Stsc121008g00006 539 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PANTHER CYTOCHROME P450 20 504 - -
Stsc121008g00006 539 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121008g00006 539 FunFam Cytochrome P450 21 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121008g00006 Stsc-Chr121008 55508 57384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121008g00006 1 528 Cytochrome P450 AT2G45970 77.401 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121008g00006 K15398 - gmx:100779986 959.903