Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121008g00002 ATGGCTGTGGTGAGTCCTATGAGTCCTGCCATGCCTACAACTCTGCACCAGGTCTATTCAGCAAGCCCTCTTCATGGAAGGGAGGTTCCAGCAGGGATCATGACAATGATGAGAGAAGAAGCTTCTTCAGAGGCACCTACTCCAAATTTGGTTGATGACATTATTCATGTTGCTGTGGCAAAAGATGTCAAAGATAGCAGGTTGAATCTCATTTGGGCAATTCAGAATTCTGGAGGAAAGAGGATTTGCATCCTTCATGTTCATGTTCCAGCAGCTACAATCCCCTTGGCCCCATTTGGTGCCAATTTTCTAGAAAGTACAGTGGCAGAGGATAAAGTTCAAGAGTTTCGCGAGAACGAAAAGCAAGCCATGCATAAGACTCTGGATAACTATCGTCTTATCTGCAAAAAAATGGGGGTAAAAGCAGAGAAACTGCATATTGATAAGGATTGCATTGAAGAAGGGATTGTAGAACTCATCTGCCAGCATAATATCCAGAAGCTTGTCATGGGAGCAGCTTCCGATAAGTACCATTCTAGGCGAATGACAGACCTTAGGTCTAAGAAAGCCATTTATGTAAGCGAAAATGCTCCGGCTTCTTGTCATATACAGTTCATCTGCAAAGGGTACCTCATACACACAAGGAATCTCAGTTTGGATGGAGGCAATGTAGAAATCAGGTCTCCTTTGACACCTCAAACAACTCACTCTCATGCTGAGCCTTCAGCACATTCAAGATCTCATTCTATTTCACTTGGACAAAATCAATGGATGAAAGCACAGCAGCTATATCGCCGAGTAAGATCTGTTAACGAAAGAAATGGAGGGAGAATTATGTCTCTTTCTTCTCCAATAAGGTTTCTCATGCAACACAATAGGATCAATAGAGAAGAAACTTCTAATGACTCAAGGCAAGCTAGTCCTTTGCTTTCGTCACCAAGCCCATTTAATTTCATTAGTGAGAGAACTGAGAATGCATCGGCCTTGAATTTGAGTAGTCCTAATGTGATTGAACCAGATTTTCATCATTCATCATCTCCTACTAGGCTGGATGGTGAAGTGGATGAGAATCTCTATGATCAACTCCAACAGGCCATGGCTGAAGCTGAGAATGCAAGGCAGGATGCTTATCAAGAGAGTGTTAGGCGCAGGAATGCCGAAAGGAATGCCATTGAAGCCATTCGCAGGGCTAAAGCTGCTGAAATGAAGTATGAAGAAGAGGTGAAATTGAAGAAAGAATTAGAGGAAGCAATAACTAGAGAAAAGGAAGAAATAGATTGTATGAAGATCCAAAGAGAGAAGCTTAATGAAGAACTCCAACGTGCCTTGCATAAGAATTCATTACTAGAAACCAAAATTGCATCAACTCAACATATGCTAGATGAGTTAGATCAGAAGAACAAATCTGATATGGATACGTTAGAAAAGTACAAGCAAGAACGCGAGGATTTGCAAACGCAGCGCGATAATGCCTTGAAAGAAGCTGAGGATTTAAGGAGAGAAATACAACAAGGAGAGGCCTCAAACTCACATGTCTTTCAACTCTTCTTAGAATTTTCTTTTGCTGAGATTCAAGAAGCTACCAATAACTTCAGTCCCTCCCAAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGTATCCTACGCCAAACTGAGGTAGCTGTAAAAATGTTGAGCCCTGACAGCAGGCAAGGACCTAAAGAGTTTCAACAGGAGGTTGAGGTACTAAGCAAGTTAAGGCATCCCAATCTGATCACACTAATAGGAACCTGCCCAGAATCTTGGACTCTTGTTTATGAGTATTTATCCAATGGAAGCCTGGAAGATCGTCTCAGCTGCGAGGATAACACGCCTCCATTGTCATGGCAAACTAGAATTCGCATTGCTGCAGAAGTGTGTTCTACTCTAGTATGTCTCCATTCTAATAAACCTCACAGCATAGTGCATGGTGATTTAAAACCAGCCAACATACTCCTTGATTCTAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTCGCGACTATTATCTTGTCGCGAGGGTACTACTACACAATTTTGGATAACTGATCCAAAAGGAACTTTTGCATATATGGACCCTGAATTCTTTGCTTCAGGGGAGCTTACACCAAAGTCAGATGTTTATTCTTTTGGAATCATATTACTAAGGTTGTTGACTGGTAAACCAGCTGTGGGAATAGCTAAGGTACTGGAGTCTGCTTCAAATGCTGGGAATTTGAGTTCCCTCCTGGATCCCTTGGCCGGAGACTGGCCGTTAGCATTGGCCGAAAAGCTCGCTCGCTTGGCTTTGAGGTGCTGCGAGATGGAGCGAAAGAACCGGCCGGATCTTCATTTGGAAGTATGGAGAATACTTGAACCTATGAAGGCTTCTTTGAGTGGAGAAAACATGTTAGGACTTGATTCTCAAGGACTTTACCAACCCCCTCCTTATTTCATTTGTCCAATCTTCAAGGAAGTGATGATAGATCCTCAAGTGGCCGCAGATGGTCATTCTTATGAAGCTCAGGCCATACAAGGATGGCTGGACAGCGGTCACGACATTTCTCCGGTGACAAATTCTAAGTTCGTAGTCCAAAATCTTGTTCCAAACCATGCTCTCCGCTCTGCAATCCAAGACTGGCTTGAAAGTTGA 2658 0.427 MAVVSPMSPAMPTTLHQVYSASPLHGREVPAGIMTMMREEASSEAPTPNLVDDIIHVAVAKDVKDSRLNLIWAIQNSGGKRICILHVHVPAATIPLAPFGANFLESTVAEDKVQEFRENEKQAMHKTLDNYRLICKKMGVKAEKLHIDKDCIEEGIVELICQHNIQKLVMGAASDKYHSRRMTDLRSKKAIYVSENAPASCHIQFICKGYLIHTRNLSLDGGNVEIRSPLTPQTTHSHAEPSAHSRSHSISLGQNQWMKAQQLYRRVRSVNERNGGRIMSLSSPIRFLMQHNRINREETSNDSRQASPLLSSPSPFNFISERTENASALNLSSPNVIEPDFHHSSSPTRLDGEVDENLYDQLQQAMAEAENARQDAYQESVRRRNAERNAIEAIRRAKAAEMKYEEEVKLKKELEEAITREKEEIDCMKIQREKLNEELQRALHKNSLLETKIASTQHMLDELDQKNKSDMDTLEKYKQEREDLQTQRDNALKEAEDLRREIQQGEASNSHVFQLFLEFSFAEIQEATNNFSPSQKIGEGGYGSIYKGILRQTEVAVKMLSPDSRQGPKEFQQEVEVLSKLRHPNLITLIGTCPESWTLVYEYLSNGSLEDRLSCEDNTPPLSWQTRIRIAAEVCSTLVCLHSNKPHSIVHGDLKPANILLDSNLVSKLSDFGISRLLSCREGTTTQFWITDPKGTFAYMDPEFFASGELTPKSDVYSFGIILLRLLTGKPAVGIAKVLESASNAGNLSSLLDPLAGDWPLALAEKLARLALRCCEMERKNRPDLHLEVWRILEPMKASLSGENMLGLDSQGLYQPPPYFICPIFKEVMIDPQVAADGHSYEAQAIQGWLDSGHDISPVTNSKFVVQNLVPNHALRSAIQDWLES 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121008g00002 885 SMART serkin_6 531 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121008g00002 885 Pfam U-box domain 817 884 IPR003613 GO:0004842|GO:0016567
Stsc121008g00002 885 MobiDBLite consensus disorder prediction 227 250 - -
Stsc121008g00002 885 ProSitePatterns Protein kinases ATP-binding region signature. 537 558 IPR017441 GO:0005524
Stsc121008g00002 885 PANTHER OS02G0152300 PROTEIN 55 881 - -
Stsc121008g00002 885 ProSiteProfiles U-box domain profile. 815 885 IPR003613 GO:0004842|GO:0016567
Stsc121008g00002 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Stsc121008g00002 885 Coils Coil 352 379 - -
Stsc121008g00002 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 885 IPR013083 -
Stsc121008g00002 885 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 504 603 - -
Stsc121008g00002 885 Gene3D HUPs 51 174 IPR014729 -
Stsc121008g00002 885 ProSiteProfiles Protein kinase domain profile. 531 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121008g00002 885 Gene3D Phosphorylase Kinase; domain 1 516 603 - -
Stsc121008g00002 885 CDD STKc_IRAK 537 796 - -
Stsc121008g00002 885 CDD RING-Ubox_WDSUB1-like 817 872 - -
Stsc121008g00002 885 Pfam Protein kinase domain 533 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121008g00002 885 SUPERFAMILY RING/U-box 811 884 - -
Stsc121008g00002 885 CDD STK_N 54 209 - -
Stsc121008g00002 885 Coils Coil 383 508 - -
Stsc121008g00002 885 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 66 175 - -
Stsc121008g00002 885 SMART Ubox_2 819 882 IPR003613 GO:0004842|GO:0016567
Stsc121008g00002 885 SUPERFAMILY Protein kinase-like (PK-like) 509 786 IPR011009 -
Stsc121008g00002 885 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121008g00002 Stsc-Chr121008 19481 24143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121008g00002 46 884 U-box Gene Family AT2G45910 50.587 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc121008g00002 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121008g00002 - - adu:107472426 1352.81