Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121007g00004 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGACTTAGACCTCTCTCACAAGAACAGTAACAGTGAAGAAGCTTCTTCAGTTGATTTGTGCCTTGGCAGCCAGGCCTCTGATTTGGAAAATCCCTTGGTAACAGCATCACCAGGTAGTGGTGGTGACACTAACAAGGCAAATAGAGAAGAATCTTTACAAAGAACAGTGTCCTCGTCCTCGTCCTCTTCGAAGAGATCCCGCCTGCAAAATGGGTCACAGAACATGTCTTGCTTGGTTGATGGATGCAGCTCTGACCTCAGTGATTGCAGGGAGTATCATAGAAGGCATAGGGTCTGTGAGAAGCACTCAAAAACCTCGGTTGTGTCGGTTGGGGGAAAGCAACAAAGGTTTTGCCAACAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCCGGAAGCGTCTTGATGGCCATAACAGGCGCCGGAGGAAGCCTCAGCCGCCGTCTTTCCTCATGAGTTCAGAGAAATTCATGTACAATTACAAAGGACCTAGGATCCTGCATTTTGGTAACCCTCAGCCGTATGCAAACCCTATTGTGAGGAACATGTGGCCTGCTGCATCCATATCCGGAGCTGGATCAGACTATGATCATCACCGGTTTCTATATCGAATCGACAAGCACAGGCAGGACAAGGAGCTTCTTCTCTGGCAAGACAATGTCCCAAAATCATGCAATGGCATCCTTGAATCCACAGCAATGCCGGGAACTCCAATCCATCAGCCTATGTGCGGCAGCACCATTGCCCCCTCCACAACTGCAAAGCTCGGCCTTAAGAAGCCGCTTTCTGATGGCAAACCTGCGTCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACATTACAAACTCAAATGCAGTCTCCGTCTCCAGGGACCGAGCAATTCGATGCTGCGGCTGATAAGCCTAGTGGCCATAAAGTACTTGTTCTTGATGCTAACTCAACCAACATTCATTGCAATGGGGTGCTGCAAATGGGACATGATGGATTGGTTGAAAATGTTGACTCACTTGCACTTCCATTTTTTTGGGAGTAG 1101 0.4814 MDWDWKEFAWDPSGLDLDLSHKNSNSEEASSVDLCLGSQASDLENPLVTASPGSGGDTNKANREESLQRTVSSSSSSSKRSRLQNGSQNMSCLVDGCSSDLSDCREYHRRHRVCEKHSKTSVVSVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMSSEKFMYNYKGPRILHFGNPQPYANPIVRNMWPAASISGAGSDYDHHRFLYRIDKHRQDKELLLWQDNVPKSCNGILESTAMPGTPIHQPMCGSTIAPSTTAKLGLKKPLSDGKPASFDSGCALYLLSTLQTQMQSPSPGTEQFDAAADKPSGHKVLVLDANSTNIHCNGVLQMGHDGLVENVDSLALPFFWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121007g00004 366 ProSiteProfiles Zinc finger SBP-type profile. 89 166 IPR004333 GO:0003677
Stsc121007g00004 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 321 IPR044817 GO:0003677
Stsc121007g00004 366 Pfam SBP domain 92 165 IPR004333 GO:0003677
Stsc121007g00004 366 SUPERFAMILY SBT domain 90 171 IPR036893 GO:0003677|GO:0005634
Stsc121007g00004 366 Gene3D - 83 153 IPR036893 GO:0003677|GO:0005634
Stsc121007g00004 366 MobiDBLite consensus disorder prediction 44 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121007g00004 Stsc-Chr121007 50190 53413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121007g00004 92 217 SBP-box Gene Family AT5G50670 54.545 3.49e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc121007g00004 SBP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121007g00004 - - gmx:100798317 456.447