Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121006g00001 ATGAAAGGTACCCTTGAAAATTTAGACTTCACAGCTTTTCCCAACCTTCAAAGACTTGATCTCAAAGTAAATAATCTTACAGGCATCATACCAAAAGACATTGGGGTACTCACAAAACTCCAATTCCTTGACCTTTCCACCAATTCTCTCAATGGCACTTTACCTCTTTCTATTGCAAACCTCACCAAAGTCTATGAGCTTGATGTGTCAAGAAATAACATAACAGGAACACTAGACCCTCGCTTATTTCCTGATGGGACCAATGATCCAAGAACTGGCCTCCTTAGTATAAAACATTTCCTGTGTCAAAGAACCCTTTTAGGTGGCAGAATTCCAAATGAAATAGGCAACATAAAAAACTTGACTTTGCTAGCTTTAGATCAAAACAACTTCTATGGACCTATACCTCCATCTATAGGAAACTGCTCACATTTAAGTATTCTTAGAGTGAATGAAAACCATCTCTCAGGTACAATACCTTCTAGTATTGGCAAGTTAACAAACTTATCCGACGTGCGGTTTCATGTGAACAACTTAACCGGCACGGTGCCACCGGAATTCGGAAACTTGTCTTCTTTAACTGTACTTCATCTAGCTGAGAACAACTTTGTTGGAGAATTGCCACCTGAGGTGTGCAAAGGTGGAAAGCTTGTCAACTTCAGTGCAGCACACAACAGTTTCACTGGTTTGATCCCCAGAAGCCTTAGAAACTGTTCAACATTGTACCGAGTTCGAATGGAGTACAACCAGTTGAAAGGCTATGCTGATCAAGATTTTGGTGTGTATCCAAATCTTATATATCTTGATTTCAGCTACAACAAGGTTCAAGGCCAGCTGTCTTCGAAATGGGGTGCCTGCAACAACTTGCAACTGCTTAAAATGGCTGGTAATTCCATAAGCAGCATTATTCAAGAAGAGATTTTTCAGTTGAAGCAACTTGAAGTACTTGACTTGTCCAATAATAAAATCTCAGGGAAGATTCCTTTGCAGATACAGAAAGCGAATCGCTTGTTTCAATTGAAATTGGGTGGCAACAAGCTTACTGGTATGATACCAGAAGAAGTTGGAAAGCTTTCTAATTTGGAGGATTTAGACTTGTCCATGAATATGCTGTTTGGACCAATCCCAAATCAGATAGAGGATTGCTCCAAGTTGCAGAGTTTAAATTTGAGCAACAATCACCTGAATGGCACAATCCCTTATCAGATTGGAAATCTTGCAGCCTTACAAAAATTTTTGGACCTGAGTTACAATTCATTTTCGGGGGAGATTCCTGCTAATCTTGGTAAGCTTGAGAATTTGGTAAGCTTGAATCTCTCTCACAACAATCTCTCCGGCCGTATCCCGGAGTTCCTTGGAGGAATGTTGAGCTTGTCAACAATCAACCTCTCTTACAATCAACTGGAAGGCCCTGTTCCAAAAACTGGCATATTCAACTCTTCTCTTCTTCCAATTGATCTGAGAAACAACAAAGATTTATGTGGCAATATCCAAGGTTTGCGGCACTGTGAAGTCTCAGTCATTGAACCTGTTGAAGAAAGCAGTGAAAGAAAAAAGCTTGCAGTTCTCTTTGGTGTTATCTTGGGTGGTGCTTTCTTTCTTTCATTGGTGTTAGTTGGGATTTTGTGCTTCCGGAATAAGCAAGAATATGCGGTTTTAATACACAGCTCTTCAACAACCAAGAGAGATAATAATCCGTTTTCAATTTGGTCGTTCGACGGCAAGATTGTCTATAAAGATATAATTGAAGCTACCAACAACTTCGACAGCCATTGCTGCATCGGAGAGGGAGCGCTCGGAAAAGTTTACAAGGCGGTTATCAAAGGAGGAGGCCAAGTGTTTGCTGTGAAAAAGATGAAATGTGAGTCAGACAGCTTAGACATTCAGAGTATAAAATCCTTCAAGAGTGAGGTGGAAGCCATGAGAGAAACTCGCCACCGGAACATTGTGAAGCTCTATGGATTCTGCTATAGAGGGACACACACGTTCTTGATTTATGAGTATATGGAGAGAGGGAACTTAGCTGATATGCTTGGAAATGACAAGAATGCATTGGAATTGGATTGGCCTAAGAGAGTTGAGATTGTCAAAGGCGTGGCACATGCTTTGTCTTATATGCATCATGATCACAATCCACCATTGATTCACAGAGATATATCAAGCAAGAATGTTTTGCTGTCCTCCAATCTTGAAGCTCGTGTCTCTGATTTCGGCACTGCTTGGTTCTTGAAGCCAGATTCATCGATTTGGACATCCTTTGCAGGCACATATGGTTATGCTGCTCCAG 2287 0.4084 MKGTLENLDFTAFPNLQRLDLKVNNLTGIIPKDIGVLTKLQFLDLSTNSLNGTLPLSIANLTKVYELDVSRNNITGTLDPRLFPDGTNDPRTGLLSIKHFLCQRTLLGGRIPNEIGNIKNLTLLALDQNNFYGPIPPSIGNCSHLSILRVNENHLSGTIPSSIGKLTNLSDVRFHVNNLTGTVPPEFGNLSSLTVLHLAENNFVGELPPEVCKGGKLVNFSAAHNSFTGLIPRSLRNCSTLYRVRMEYNQLKGYADQDFGVYPNLIYLDFSYNKVQGQLSSKWGACNNLQLLKMAGNSISSIIQEEIFQLKQLEVLDLSNNKISGKIPLQIQKANRLFQLKLGGNKLTGMIPEEVGKLSNLEDLDLSMNMLFGPIPNQIEDCSKLQSLNLSNNHLNGTIPYQIGNLAALQKFLDLSYNSFSGEIPANLGKLENLVSLNLSHNNLSGRIPEFLGGMLSLSTINLSYNQLEGPVPKTGIFNSSLLPIDLRNNKDLCGNIQGLRHCEVSVIEPVEESSERKKLAVLFGVILGGAFFLSLVLVGILCFRNKQEYAVLIHSSSTTKRDNNPFSIWSFDGKIVYKDIIEATNNFDSHCCIGEGALGKVYKAVIKGGGQVFAVKKMKCESDSLDIQSIKSFKSEVEAMRETRHRNIVKLYGFCYRGTHTFLIYEYMERGNLADMLGNDKNALELDWPKRVEIVKGVAHALSYMHHDHNPPLIHRDISSKNVLLSSNLEARVSDFGTAWFLKPDSSIWTSFAGTYGYAAP 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121006g00001 762 FunFam Leucine-rich repeat receptor protein kinase MSP1 553 668 - -
Stsc121006g00001 762 Gene3D Ribonuclease Inhibitor 178 506 IPR032675 -
Stsc121006g00001 762 SMART serkin_6 588 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121006g00001 762 SUPERFAMILY L domain-like 5 207 - -
Stsc121006g00001 762 PRINTS Leucine-rich repeat signature 310 323 - -
Stsc121006g00001 762 PRINTS Leucine-rich repeat signature 40 53 - -
Stsc121006g00001 762 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Stsc121006g00001 762 Pfam Leucine rich repeat 10 50 IPR001611 GO:0005515
Stsc121006g00001 762 ProSiteProfiles Leucine-rich repeat profile. 312 333 IPR001611 GO:0005515
Stsc121006g00001 762 SMART LRR_sd22_2 310 325 - -
Stsc121006g00001 762 SMART LRR_sd22_2 358 384 - -
Stsc121006g00001 762 SMART LRR_sd22_2 37 63 - -
Stsc121006g00001 762 Gene3D Ribonuclease Inhibitor 92 177 IPR032675 -
Stsc121006g00001 762 SMART LRR_typ_2 190 214 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 431 455 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 37 60 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 383 406 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 358 382 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 61 85 IPR003591 -
Stsc121006g00001 762 SMART LRR_typ_2 310 333 IPR003591 -
Stsc121006g00001 762 SUPERFAMILY Protein kinase-like (PK-like) 565 762 IPR011009 -
Stsc121006g00001 762 Pfam Leucine Rich Repeat 433 453 IPR001611 GO:0005515
Stsc121006g00001 762 Pfam Leucine Rich Repeat 384 404 IPR001611 GO:0005515
Stsc121006g00001 762 PANTHER LEUCINE RICH REPEAT KINASE 2 139 762 - -
Stsc121006g00001 762 Gene3D Ribonuclease Inhibitor 1 88 IPR032675 -
Stsc121006g00001 762 SUPERFAMILY RNI-like 173 494 - -
Stsc121006g00001 762 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 212 - -
Stsc121006g00001 762 ProSitePatterns Tyrosine protein kinases specific active-site signature. 714 726 IPR008266 GO:0004672|GO:0006468
Stsc121006g00001 762 Pfam Protein kinase domain 593 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121006g00001 762 Gene3D Transferase(Phosphotransferase) domain 1 669 762 - -
Stsc121006g00001 762 ProSiteProfiles Protein kinase domain profile. 588 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121006g00001 762 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 213 507 - -
Stsc121006g00001 762 Gene3D Phosphorylase Kinase; domain 1 551 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121006g00001 Stsc-Chr121006 5134 7995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121006g00001 24 762 Receptor kinase-like Gene Family AT4G08850 43.627 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc121006g00001 Pkinase 4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121006g00001 - - ahf:112786571 1248.03