Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121005g00005 ATGAGTGTTGTGGGTTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTGGTAAAGCAACGGGGGGTCGACGTTTTGCTGAATGACGAATCCAAGCGCGAAACCCCTTCAGTGGTATGCTTTGGAGAGAAGCAACGGTTTTTGGGCTCTGCTGGCGCTGCTTCTGCTATGATGCACCTGAAGTCGACGGTGTCACAATTGAAGAGACTGATTGGGAGGAAATTTGCAGATGCTGATGTCCAAAGGGAGGTGAAAATGCTTCCCGTTGCTACGTCTGAAGGCCTGGATGGCGGCATTTTGATTCACTTGGAATACATGAATGGGAGACATACTTTCACACCAGTTCAGATAATGTCCATGCTCTTGGCTCACTTGAAGACTATGACCGAGAAAGATCTGGGTTTGCCTGTTTTGGATTGTGTTATTGGGATCCCATCATACTTTAATGACTTACAGAGAAGAGCATATCTGGATGCAGCAAAAATTGCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGGTCTTAGTTATGGAATTTACAAAACAGATATTCACAGTACAGGTCCAATTAATGTTGCATTTATTGACATTGGTCACTGTGATACTCAGGTCTCAATTGCAGCATTTGAGTTTGGGCAAATGAAGATACTTTCGCATGCGTCTGACAAGAGCTTAGGAGGGAGGGATTTTGATGAAGTTCTATTTAATCATTTTGCAGCACAGTTTAAGGAACAGTACAAAATTGACGTGTATTCTAATTTTAAAGCAAGCATTAGGCTACGTGCAGCATGCGAGAAGTTGAAGAAAGTTTTGAGTGCAAATCTAGAGGCACCTCTAAATATTGAGTGCTTGATGGATGAGAAAGATGTAAAGGGCTTTATTACGAGGGACGAATTTGAGAAGCTGGCATCGGAATTATTGGAGAGAGTTTCTATTCCTTGCAAAAGAGCATTAGTTGATGCACATTTGACTGCGGAGAAAGTTTCTTCCGTGGAGCTTGTTGGCTCGGGTTCTAGGATTCCAGCTATTACTAAGATATTAACCTATATTTTCAAGAAAGAACCCAGCCGAAAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTTTACAGTGTGCAATGCTCCATCCCAATTACCGTGTGAGAGAATACGAGGTCCAGGATTCTTTTCCTTTTTCAGTTGGACTTTCATTAGACGAATATCCAGTTAGTGCAGGATCAAATGGTGCACTATTCCCCAAAGGCCAACCCATTCCGAGTGTTAAAGTCCTAACATTGCATCGAACCAATTTGTTCTATTTGGAAGCCTTCTATGCTAATCAAAATGAACTACCACCTGGGGCATCTCCTAAACTTGGTTGCTTCACGATTGGTCCTTTCCAAGGATCCAATGGTAGTAAGACAAAAGTTAAAGTTAGAGTTCAACTAGATTTGCATGGCATTGTCAGTATTGAATCAGCTACATTGATCAGGGATCAGGTGGATGATTCAGTTACAATGGTTGATTATCATTCAAATTCTGATCCAATGGATGTTGACTCTGTTCCAGATACAGTTGCCAATGGAGACGACGAAATTTCTGCTGATGCTACGAGGAAAGGCAAAAGCAACAGAAGGCTTAATGTGCCAGTAAGTGAAAATATTGATGGTGCAATGACAAAAGCTGAAATACTGGAAGCTTGTAAAAAAGAACTACAGTTGGCCCAACAGGACAGAACTGTGGAGCTAACCAAAGAAAAGAAGAATACCTTGGAGTCTTATGTCTATGATATGAGAAATAAGCTGGTGGATCCAATAGAGAATAGGTATAAAGACGAAGAAAAAAGAAATCTAGCAGCAAGGGATTTGTTAAAATGCATTTCAGAGCATTGCACATTTGCAGATTCCCTTCCACCCCAATACAAGGAACTGGTACTCAATGAGTGTAATAAAGCAGAGCAGTGGCTAAGAGAGAAGATTCAGCAACAAGAATCTTTGCCCAAGAACATTGACCCAATATTTTGGTCTATTGATATTCAGGGCAAGACAGAGGATCTAAAAATAATGTGTCAACAGATATTGGAATCCAGGACTTCTCCGATCGAAGAAGACATTGACGAAGACAAGCCAGATGCTTCAAATCAGCCATGA 2145 0.4145 MSVVGFDIGNENCVIAVVKQRGVDVLLNDESKRETPSVVCFGEKQRFLGSAGAASAMMHLKSTVSQLKRLIGRKFADADVQREVKMLPVATSEGLDGGILIHLEYMNGRHTFTPVQIMSMLLAHLKTMTEKDLGLPVLDCVIGIPSYFNDLQRRAYLDAAKIAGLKPLRLIHDCTATGLSYGIYKTDIHSTGPINVAFIDIGHCDTQVSIAAFEFGQMKILSHASDKSLGGRDFDEVLFNHFAAQFKEQYKIDVYSNFKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFITRDEFEKLASELLERVSIPCKRALVDAHLTAEKVSSVELVGSGSRIPAITKILTYIFKKEPSRKLNASECVARGCALQCAMLHPNYRVREYEVQDSFPFSVGLSLDEYPVSAGSNGALFPKGQPIPSVKVLTLHRTNLFYLEAFYANQNELPPGASPKLGCFTIGPFQGSNGSKTKVKVRVQLDLHGIVSIESATLIRDQVDDSVTMVDYHSNSDPMDVDSVPDTVANGDDEISADATRKGKSNRRLNVPVSENIDGAMTKAEILEACKKELQLAQQDRTVELTKEKKNTLESYVYDMRNKLVDPIENRYKDEEKRNLAARDLLKCISEHCTFADSLPPQYKELVLNECNKAEQWLREKIQQQESLPKNIDPIFWSIDIQGKTEDLKIMCQQILESRTSPIEEDIDEDKPDASNQP 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121005g00005 714 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 590 IPR029047 -
Stsc121005g00005 714 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 519 IPR029047 -
Stsc121005g00005 714 FunFam Heat shock 70 kDa protein 4 38 113 - -
Stsc121005g00005 714 Pfam Hsp70 protein 3 617 IPR013126 GO:0005524|GO:0140662
Stsc121005g00005 714 Gene3D - 186 360 - -
Stsc121005g00005 714 CDD HSPA4_like_NDB 2 380 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 30 42 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 332 348 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 2 15 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 140 160 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 472 488 - -
Stsc121005g00005 714 PRINTS 70kDa heat shock protein signature 363 383 - -
Stsc121005g00005 714 FunFam Heat shock 70 kDa protein 4 230 313 - -
Stsc121005g00005 714 FunFam Heat shock 70 kDa protein 4 1 85 - -
Stsc121005g00005 714 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Stsc121005g00005 714 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Stsc121005g00005 714 Gene3D - 557 623 IPR029048 -
Stsc121005g00005 714 Gene3D - 38 113 - -
Stsc121005g00005 714 FunFam Heat shock 70 kDa protein 4 110 197 - -
Stsc121005g00005 714 PANTHER HSC70CB, ISOFORM G-RELATED 1 600 - -
Stsc121005g00005 714 Gene3D - 5 374 - -
Stsc121005g00005 714 Gene3D Actin; Chain A, domain 4 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121005g00005 Stsc-Chr121005 32635 39532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121005g00005 4 602 Calmodulin-binding Proteins AT1G16030 30.592 4.20e-80 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121005g00005 K09489 - gmx:100808218 1037.71