Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121002g00018 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCGGCGTTGACCTTTGGGCTTTCTTCCAGGCTGCTATCGACGTCGCTTCCGCCGATAGCCCCGCCGAATTGAAGCGCCGCCGTGACGGAATCGTCGAGCGCCTTTACGCCGCCACTGCCACGCCTTCCCGCTGTTTCAATTGCGAAGCACACAATCAACAAAACAAATCCTCAGAGGAGGACTTGGATCCTTTTGGAGGATTATTCGATGACGAACAGAAGAAGATTCTAGAGATTAAACACCAGCTTGAAGACCCTCACCAGTCGGAAGATGCGTTGGTAGAGTTGCTACAGAATCTGGCGGACATGGATATTACGTTCCAGGCGTTAGAGGAAACTGACATTGGGAGGGATGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGATTGGGTGAAGTTGAAGGCACCTGGAGAATCTGCTACTACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACAACATGGGGATCATCATCAGATTCCTGATTTTGCATGCTCGCCAAATCCAGATAATGGCAATTTTGAGTCAGAGGGCAACAATTCTTCCGAAGCAGAACCAAAACCAAAACCAAAACCAGTGCCTCGCAAAGAACCTCTGCCAAAACCAGCTCAAAAATCACCATCACCATTACCATCAGTTCCCACTCCTCCCCTTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGGCTTCAAGAGAATTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACTTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGCTTTCTTTGCTAAGAACAAAGGCAGCATGGGTTCTCAGGGAAGGAGATGGTGA 966 0.4752 MDLDDFRSILDTAGVDLWAFFQAAIDVASADSPAELKRRRDGIVERLYAATATPSRCFNCEAHNQQNKSSEEDLDPFGGLFDDEQKKILEIKHQLEDPHQSEDALVELLQNLADMDITFQALEETDIGRDVNRLRKHSSSEVRRLVKLLVRKWKEIVDDWVKLKAPGESATTVIGDDEDSPQQRNQQHGDHHQIPDFACSPNPDNGNFESEGNNSSEAEPKPKPKPVPRKEPLPKPAQKSPSPLPSVPTPPLQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNAFFAKNKGSMGSQGRRW 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121002g00018 321 Coils Coil 105 125 - -
Stsc121002g00018 321 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 86 167 IPR035441 -
Stsc121002g00018 321 CDD TFIIS_I 85 158 - -
Stsc121002g00018 321 MobiDBLite consensus disorder prediction 171 267 - -
Stsc121002g00018 321 SMART TFS2_5 88 159 IPR003617 GO:0005634
Stsc121002g00018 321 MobiDBLite consensus disorder prediction 216 232 - -
Stsc121002g00018 321 Pfam TFIIS helical bundle-like domain 108 157 IPR017923 -
Stsc121002g00018 321 Coils Coil 263 290 - -
Stsc121002g00018 321 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 320 IPR044790 -
Stsc121002g00018 321 ProSiteProfiles TFIIS N-terminal domain profile. 83 160 IPR017923 -
Stsc121002g00018 321 MobiDBLite consensus disorder prediction 233 250 - -
Stsc121002g00018 321 MobiDBLite consensus disorder prediction 302 321 - -
Stsc121002g00018 321 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 82 171 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121002g00018 Stsc-Chr121002 69061 71483 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc121002g00018 Med26 7.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121002g00018 - - aip:107630962 506.138