Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121002g00007 ATGTATGCTTCAACTTCCTTCACCACTTCACATATCATTCATCAACTTCTCATCACAGAATCTCACTCAAGAAAGTTACTCATCCTTCCAAACCCACTTTCTCATCACCATGATTCCCCACCACCACAACCAACAGCAACAACAAACAACTCAACCGATTTATACCTCGGAAACGGTTCATTCGATGCCAACGTTGTCATGGTCCTCTCTGTCCTACTCTGCGCTCTTATTTGCTCCTTGGGATTAAACACAATCATAAGGTGTGCTTTGAAGTGTTCAGATTTGGTAATCAACGACGACTCATCATCATCTTCATCCTCAACAACAAATCAAACCCCTTCATCATCATCCAACACTGGAATCAAGAAGAAAGCTCTCAAGACTTTCCCCATAATTACATACGAGTCAACGGAGTTGAACAGTTTGGACACAGAGTGTGTGATATGCCTCTCGGACTTCACAAACGGTGAAAAGTTGCGTATTCTGCCAAAGTGTAACCATGGATTCCATGTTCGCTGCATTGACAAGTGGCTCACTTCTCATTCCTCTTGTCCCAAGTGCAGACAATGCCTAATTCACACGTGCCAAAAAATTGTTGGAGCAACTCATCCGCCGCTACCTCTACCTCAAACCGTTATAACCATTGAACCATTGCAGCAAGAAACCATGGTGCGTAATTATAGACAACCAAACCAAATTAATTAG 705 0.427 MYASTSFTTSHIIHQLLITESHSRKLLILPNPLSHHHDSPPPQPTATTNNSTDLYLGNGSFDANVVMVLSVLLCALICSLGLNTIIRCALKCSDLVINDDSSSSSSSTTNQTPSSSSNTGIKKKALKTFPIITYESTELNSLDTECVICLSDFTNGEKLRILPKCNHGFHVRCIDKWLTSHSSCPKCRQCLIHTCQKIVGATHPPLPLPQTVITIEPLQQETMVRNYRQPNQIN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121002g00007 234 SUPERFAMILY RING/U-box 129 193 - -
Stsc121002g00007 234 Pfam Ring finger domain 145 188 IPR001841 -
Stsc121002g00007 234 CDD RING-H2_EL5-like 145 188 - -
Stsc121002g00007 234 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Stsc121002g00007 234 PANTHER RING-H2 FINGER PROTEIN ATL78 19 223 IPR044602 GO:0016567|GO:0016740
Stsc121002g00007 234 SMART ring_2 146 187 IPR001841 -
Stsc121002g00007 234 MobiDBLite consensus disorder prediction 31 51 - -
Stsc121002g00007 234 FunFam RING-H2 finger protein ATL73 108 193 - -
Stsc121002g00007 234 MobiDBLite consensus disorder prediction 100 120 - -
Stsc121002g00007 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121002g00007 Stsc-Chr121002 40969 41964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121002g00007 28 192 C3H Transcription Factor Family AT3G10910 46.061 1.97e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121002g00007 K19040 - gmx:100527126 270.781